Protein Info for PP_3108 in Pseudomonas putida KT2440

Annotation: Rhs-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1385 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details PF05488: PAAR_motif" amino acids 73 to 138 (66 residues), 64 bits, see alignment 2.4e-21 PF20148: DUF6531" amino acids 232 to 305 (74 residues), 75.6 bits, see alignment 6.2e-25 TIGR01643: YD repeat (two copies)" amino acids 505 to 545 (41 residues), 21.9 bits, see alignment (E = 1.9e-08) amino acids 527 to 567 (41 residues), 36 bits, see alignment (E = 6.8e-13) amino acids 676 to 714 (39 residues), 24.5 bits, see alignment (E = 2.9e-09) amino acids 699 to 736 (38 residues), 22.1 bits, see alignment (E = 1.7e-08) amino acids 737 to 777 (41 residues), 22.3 bits, see alignment (E = 1.4e-08) amino acids 859 to 896 (38 residues), 27.4 bits, see alignment (E = 3.3e-10) PF05593: RHS_repeat" amino acids 547 to 585 (39 residues), 30.3 bits, see alignment (E = 8.7e-11) amino acids 859 to 894 (36 residues), 32.8 bits, see alignment (E = 1.4e-11) PF03527: RHS" amino acids 1172 to 1204 (33 residues), 63.1 bits, see alignment (E = 3.2e-21) TIGR03696: RHS repeat-associated core domain" amino acids 1199 to 1274 (76 residues), 84.1 bits, see alignment 7.5e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3108)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88I91 at UniProt or InterPro

Protein Sequence (1385 amino acids)

>PP_3108 Rhs-related protein (Pseudomonas putida KT2440)
MFEAARFGDEISHTSALGGFLIGAALGIALVATVAIATFTCGFGVALLAGLAAGIGGSLL
TAAGEAIGSMFSSPSGTITTASPNVFINSRKAARVEKSIGACDKHPGPVQIAEGSTNVFI
NSVAAARKGDKLTCGATISGGSDNVIIGGGTYRYLPVDDEVPEWLRTTVDVLMAIAGAAG
GIAQLIKAGTQAGMKAVMPCALKFTAGFVAGEVASRYVVEPVARKAIGGLVGNPVDLTTG
RKLIPDEIDFSLPGLMPIEWSRFYASDLTVDSVLGRGWVLPWEQSLRRQGAFIYLTDNQG
REVPFVTLQPGQRIYNPHEQVYLVCTEGGHYILQTLDNLFFYFGEVPDTNTEVPLQRIEN
VLGHFLHFTRTPDGTLTDISATGGTRVHLHYDNPLGRLTDIKRVVNNEAVETLTQYRYDE
HGQLSAVINRNGDTVRSFSYADGLMVTHSNALGLGCHYRWQTLGDKPRVVEHWTSDGEHY
HFRYDLDSRTSWATDVLGRELEVQYNADHRVVASRDYGGERYAIELDEHGNMVGLTLPDG
NRLQFKYDEFSRLLEETDPLGRKTQYEYHHLTTLVTQVSYPDGSTWRARFDDKGNLLAEF
DALGQMTEYLNSDDGLPHTIIDATYKSKYLWWNTLAQVERYQDCSGKSTYYRYDERQHLV
AVTDALNQTTTLARKPDGEVLRISHPDGTTESFTYNVYGQVLSHTDGKGQTTRLMRTARG
LPSSRQDAKGQRVRYEYDKAMRLTALVNENNATYSFAYDASDRLSEEVRVDNLTRRFSYD
VGGHLTRLDEIGYGENAERPERHTLFERDAIGRLIAKLNSDAQQRFTYDDGDRLLSIERQ
PTGIGKQLGITEEKLEYAYDLLGRLTKEISPDGTLGYEYDPLSNLTTLTLPDGRKVNHLY
YGSGHLHQLNLDGQVISDMERDDLHREVYRTQGKLTSCFGYDAMGRKAWQFASTLPADKL
SQVHNTGINTSLLVEHAYNPIHRRYQYDPAGELVRTLDKLRGEIKYEYEANGQLRSRDTG
SLIGSEEFRYDPAANRLDFNARQFDKVKDNRIKQWRDQEYRYDPWGNLIEKRSGHSKLQH
FSYDCENRLVRAETLVNGKLESQGEYRYDSLGRRIAKQAEINGEVEQKRFLWQGLRMLRE
ETPGQSILYLYEPGSYAPLARVDQVEGEGQKVYYFHTDQIGTPLELTDSEGEIVWQATYR
SWGTIETLSIKEVDQNLRFQGQYFDAETGLHYNTFRYYYSEVGRYVTQDPIGLDGGLNLY
RYGQNPAGWIDPWGWECWSTARKNYWKAEAKAPTRAYSPTNLVRMAEGKAPKMTVEVISR
KTDKISIREYALELHHNDIPQRVGGAGVHDSSNLLALTPWEHEAVDQFRHVGSDLIRVIK
GVDVW