Protein Info for PP_3065 in Pseudomonas putida KT2440

Annotation: Pyocin R2_PP, tail formation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF05954: Phage_GPD" amino acids 38 to 312 (275 residues), 69.4 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: K06905, (no description) (inferred from 100% identity to ppu:PP_3065)

Predicted SEED Role

"FIG032563: Phage tail protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88ID4 at UniProt or InterPro

Protein Sequence (347 amino acids)

>PP_3065 Pyocin R2_PP, tail formation (Pseudomonas putida KT2440)
MKPTYQIVADGSDITALINDRLLLLRTSDKPGMESDEFELRIDDRDQAVALPARGSNVVV
MMGYEGQGLTRLGAYTVDEVELSGPPDTIVIRGKASDMRGSGKTVRSGSWENVPLSQIVG
EIAKRNGWEVSCPVDTKVERVDQRNESDYNFVTRLAKQYDCTAKVAESKLLVMPRQGGQS
TTGKALAVVTINKTYVSRYQFRLGDRNSQKAVKTQHQDPKTGKLQVVELANDESPDGLPP
VHTDRHVYPNKTSAQQAAKARLAAFNRSTAGVRLEMPGRTDLFAERSINAQGFKPGLDGE
YLVDGVEQVFTQSGWTTTVECNGGKKGKAKASGKKKKDTKPLKVEQL