Protein Info for PP_3025 in Pseudomonas putida KT2440

Annotation: Transporter, LysE family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 17 to 26 (10 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 147 to 172 (26 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details PF01810: LysE" amino acids 15 to 201 (187 residues), 98.2 bits, see alignment E=2.2e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3025)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88IH4 at UniProt or InterPro

Protein Sequence (206 amino acids)

>PP_3025 Transporter, LysE family (Pseudomonas putida KT2440)
MNISTLLIFIPACFALNMAPGPNNLLSINNATQYGFWASCMAGTGRLIAFATMIALAAAG
LAVVLETSELVFYAIKILGAAYLFYLSFKLWTAKAQQREASQTKTKNIASLAKQEFLIAA
GNPKAILIFTAFLPQFINPAHDVAPQFAVLGVLFLILEMIALAGYALIGLHLRRWFSEPK
GKRLFNRICAVLLSGAASILLATRRT