Protein Info for PP_2893 in Pseudomonas putida KT2440

Annotation: conserved exported protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1224 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF04357: TamB" amino acids 899 to 1224 (326 residues), 205.1 bits, see alignment E=1.1e-64

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to ppu:PP_2893)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88IV6 at UniProt or InterPro

Protein Sequence (1224 amino acids)

>PP_2893 conserved exported protein of unknown function (Pseudomonas putida KT2440)
MKRVIKFTSLGLLGGVASVGLVLGLLLGTQAGSRWVLGKVPGLEVADFQGRLAGSWQASR
LTWADGGSTVEMQAPLLAWSPACLLRATLCIDQLQADRIDMAFAPSTEPTESAPLQLPTL
RLPLAIELGEVKVGQLRLDGSDLLGDLHLAAHWTNSGIRIDSLRLLRDDLQLSLQGDLQP
EGDWPVKLQAQLQLPAVDEKPWQLALTANGQLQKTLELAGTSSGYLDATLSGQLQALAEH
LPATLHIRSEAFKPAGALPDTLQLNALELDAKGDLLHGYKLSGKARLPAEQSPIALLLSG
LVDSKGARLDALDLTASDSQRVKLQATADWQQGLSADAQLDWQDFPWLRLYPMETPPEVT
LKRFNTQVHYRDGNYQGTFTGDLDGPAGAFSIASPFEGDLTQVKLPQLALTAGQGKAAGS
VAVRFADTLAWDVDLQLSALDPAYWLAELPGTLAGPLRSKGELKGDVLTLDAQLDLKGRL
RGQPAMLKAETQGAGQNWTLGTLAIQLGDNRINGSGSLQQRLAGRIDLDLPRLGQLWPRL
QGRVKGRLDVAGTLQAPQGTLTLQGQRLAQAENRLQQLDLDARLDNAQRGVVELKATGIH
LGDTALGTLQANGKGDIRQQALTLALDGPQLKLDLGLDGQLNKGDWRGRLATGRIQAGGQ
EWQLQAPARLQRLASGQLDFGAHCWRSGQASLCGDDQRLAPEPRLRYHLKQFPLGSLAQW
LPKDFAWQGLLNADINLDIPASGPKGTVVVDASGGTLRVRDKGRWIDFPYQALRLDSTLA
PRRIDTRLAFRGERLGELNVNARLDPLGKNKPLSGDFRLAGLDLSVARPFVPMVERLAGQ
LNGSGRLSGTLLAPQVNGNLMLSGGEVSGAELPASLQDLSLQALIAGEQVQLNGNWRSGE
AGRGQLSGNLTWGQALGMDVRLQGQQLPVAVEPYATLEVAPDLTLRLIDDKLAVTGKVQV
PKGKITVRELPPSTVKVSDDTVIVGHQTEEGKPPMAMAMDIDVEVGRDKLSFSGFGLTAN
LLGHVHIGDNLDTRGELSLADGRYRAYGQRLTIRRARLLFAGPIDQPYLDIEAIRKVDDV
IAGIRLSGSAEQPTTKVFSEPAMSQEQALSYLVLGRPLGNTGEDNNMLAEAALGLGLAGS
AGITGSLASSLGIDDFQLDTEGSGNSTSVVASGNITEKLSLRYGVGVFEPANTIALRYKL
SKKVYLEAASGLASSLDIFYKRDF