Protein Info for PP_2789 in Pseudomonas putida KT2440

Annotation: putative Oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 PF02525: Flavodoxin_2" amino acids 13 to 197 (185 residues), 137.7 bits, see alignment E=4.2e-44 PF03358: FMN_red" amino acids 14 to 121 (108 residues), 50.7 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2789)

Predicted SEED Role

"Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)" in subsystem Bacterial hemoglobins or Flavohaemoglobin or Glutaredoxins (EC 1.14.12.17)

Isozymes

Compare fitness of predicted isozymes for: 1.14.12.17

Use Curated BLAST to search for 1.14.12.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88J60 at UniProt or InterPro

Protein Sequence (201 amino acids)

>PP_2789 putative Oxidoreductase (Pseudomonas putida KT2440)
MALHYLEFVMKRKRMLVILGHPSNDSFCGAVSERYVEAATQAGHEVRLLRLDTLDFDPVL
HDGYNQIQLLEPDLINAQNDITWAEHLTLVYPIWWGGIPALLKGFFDRVFLPGFAFKYRK
GSPFPDKLLKGRTAHLLVTMDTPPWYYRWVYRMPGLHQMRKTTLEFCGIKPLKTLTFGPV
LGSKPEQREAWLKQVQAVASR