Protein Info for PP_2689 in Pseudomonas putida KT2440

Annotation: putative Endoribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 PF01042: Ribonuc_L-PSP" amino acids 12 to 121 (110 residues), 87.7 bits, see alignment E=3.1e-29

Best Hits

Swiss-Prot: 38% identical to Y709_SYNY3: RutC family protein slr0709 (slr0709) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 99% identity to ppf:Pput_3063)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JG0 at UniProt or InterPro

Protein Sequence (123 amino acids)

>PP_2689 putative Endoribonuclease (Pseudomonas putida KT2440)
MKHAIKTELFASRAPLEWAVVGNGTLYTAQIPIDTQGQVVAGGIEAQARQTLDNLRHTLE
AAGSSLDAVTQVLIYVTDRRYLATVNAVYAEYFQAPYPNRAAVVVAGLAREEMLVELVVY
ACL