Protein Info for PP_2599 in Pseudomonas putida KT2440

Annotation: Chemotaxis sensory transducer family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 transmembrane" amino acids 182 to 200 (19 residues), see Phobius details PF13492: GAF_3" amino acids 264 to 385 (122 residues), 31.1 bits, see alignment E=4.3e-11 PF13487: HD_5" amino acids 590 to 751 (162 residues), 148.2 bits, see alignment E=3.2e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2599)

Predicted SEED Role

"Chemotactic transducer-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JQ0 at UniProt or InterPro

Protein Sequence (796 amino acids)

>PP_2599 Chemotaxis sensory transducer family protein (Pseudomonas putida KT2440)
MLQAQAKPDYRYDPRLRPWFAEATVQPSTVLTRPYVFFTTREVGLTMAQRSVDGGAVIGL
DVSVNDLASETQDLRMTPGTEIVVVDDQGNVVAYPDPQRAIVHEGQGVRLSRVAELGAPS
LARLYADLPKGNQPQPYQVDGQTWYGIRVQLTTLAGHDLHVLIAVPGHELLVGARKVLFE
QLLWTVALMAVLLVLGGVLGRRIGRPLRLLREQVQGLASFDFSREVGVHSRVSEVRELSR
VLSRMSGTIRHFQAITLALSRERDLERMLDGVLSHLVEAAGGDAGGVYLYDAEQALLRLA
ASCRGEHYPSELAVDESARQHLAATVTQALSLHERSLAVVLNDRSQALLGILVLQMGEEQ
AQERVGEAFRRFVEELSGVAAVAIETRQLVEAQQRLLDAMIKLLADAIDAKSPYTGGHCE
RVPQLAQMLLDQAVAADSGPFASFSMTEAERYEFRVAAWLHDCGKVTSPEYVVDKATKLE
TLYNRIHEVRMRFEVLWRDAELAYWQGLASGVDQQVLKAALQRSQAELQDDFAFVAQANI
GGEFMQDTDIQRLQVIGKRRWLRHFDNRLGISRDEAERLVGVPQPELPTEEPLLADRPEH
CVPWGTRTPPVVKDDPRNIWGFDMHLPGHASNYGELYNLSIRRGTLTDEERFKINEHIVQ
TIIMLSALPLPRQLKRVPDIAGNHHEKMNGSGYPRRLDGQDLGIAERVMAIADIFEALTA
ADRPYKPPKTLSESVKILVAMAREGHVDGQLLQLFLSSGVYRQYAERFLRTEQIDEVDVT
YWLAQIQERSAARPVN