Protein Info for PP_2561 in Pseudomonas putida KT2440

Annotation: putative secreted hemolysin-type calcium-binding bacteriocin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3608 PF03098: An_peroxidase" amino acids 417 to 699 (283 residues), 129.1 bits, see alignment E=2e-41 amino acids 762 to 842 (81 residues), 41.5 bits, see alignment (E = 7.2e-15) amino acids 1915 to 2234 (320 residues), 128.2 bits, see alignment E=3.7e-41 amino acids 2296 to 2371 (76 residues), 44.1 bits, see alignment (E = 1.1e-15) PF00353: HemolysinCabind" amino acids 910 to 942 (33 residues), 33.5 bits, see alignment (E = 3.4e-12) amino acids 946 to 975 (30 residues), 21.3 bits, see alignment (E = 2.2e-08) amino acids 1051 to 1080 (30 residues), 14.4 bits, see alignment (E = 3.1e-06) amino acids 1196 to 1224 (29 residues), 12.9 bits, see alignment (E = 9.2e-06) amino acids 2437 to 2471 (35 residues), 35.6 bits, see alignment (E = 7e-13) amino acids 2473 to 2506 (34 residues), 22.3 bits, see alignment (E = 1.1e-08) amino acids 2508 to 2537 (30 residues), 12.6 bits, see alignment (E = 1.1e-05) amino acids 2575 to 2602 (28 residues), 18.4 bits, see alignment (E = 1.7e-07) amino acids 2706 to 2732 (27 residues), 14.7 bits, see alignment (E = 2.5e-06) amino acids 3168 to 3202 (35 residues), 30.7 bits, see alignment (E = 2.5e-11) amino acids 3176 to 3211 (36 residues), 30.7 bits, see alignment (E = 2.5e-11) amino acids 3188 to 3220 (33 residues), 21.3 bits, see alignment (E = 2.2e-08) amino acids 3213 to 3246 (34 residues), 26.3 bits, see alignment (E = 5.7e-10) amino acids 3294 to 3328 (35 residues), 34.1 bits, see alignment (E = 2.1e-12) amino acids 3376 to 3411 (36 residues), 30.7 bits, see alignment (E = 2.5e-11) amino acids 3404 to 3438 (35 residues), 31.9 bits, see alignment (E = 1e-11) amino acids 3413 to 3447 (35 residues), 29.8 bits, see alignment (E = 4.6e-11) amino acids 3440 to 3474 (35 residues), 32.4 bits, see alignment (E = 7.5e-12) amino acids 3466 to 3501 (36 residues), 36.3 bits, see alignment (E = 4.4e-13) amino acids 3503 to 3533 (31 residues), 22.6 bits, see alignment (E = 8.3e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JT6 at UniProt or InterPro

Protein Sequence (3608 amino acids)

>PP_2561 putative secreted hemolysin-type calcium-binding bacteriocin (Pseudomonas putida KT2440)
MANFSKSDLEFILKQIFIAEAHADGASLIDLLPNSQVPFGLRTVDGSYNNLVTGQSEFGA
ADNSFLRLLEASYRANYVGTGNVVDSQPRTISNLIVDQTANNPAAVEANGGAAPVMSPGI
DGVFGTADDKPVFFIPNVSPDAGLTAGFNAWMTFFGQFFDHGLDLVSKSSTDIVFIPLRP
DDPLFVAGSPTNFMVLSRAVRTAGADGVVGTADDSQPNTTSPFVDQSQTYSSHPSHQVFL
REYTVNAAGDPVATGRLITNRDLGADGKFGTADDGNGESGGMATWAVVKAQARDLLGINL
TDADVHSVPLLATDAYGNFLRGPNGMPQVVMRVNNGADGIAGTADDVTQLVEGDRNAPIS
LANAVSTGHGFLDDIAHNAAPVVVGGALQADADTLVGNAQPVGQGGNNLTYDNELLDAHY
IAGDGRVNENIGLTAVHHVFHSEHNRLVQQTKDTLLAAGDLAFLNEWLIDDVTAIPTTPA
DIAALVWDGERLFQAAKFGTEMQYQHLVFEEFARTIQPQIDEFLAPNGYDTSINPAILAE
FAHVVYRFGHSMLTETVDRYDPAFNPVSADPANPDQQLGLIAAFLNPLAFAGSGATADEA
AGAIIRGVTRQVGNEIDEFVTEALRNNLLGLPLDLPALNIARGRDTGIPSLNEARREFYA
ATGDSQLKPYMSWVDFADHLKHPASLINFIAAYGTHSSITGATTEAAKRAAAVALVLGGD
GAPLDRLDFLNGTGAYANVTLAGADGIAGTADDIAGVTVTGVDAIDFWVGGLAEKKMPFG
GMLGSSFNFVFETQLEALQNGDRFYYLSRTAGMNFGTELENNSFAKLIMANSDVTHLSNT
VFLTPTFTLEVNQANQFTGLGADGKADPTGGIEINGVEIVPLVIRDNPDTVGPDSNFLHY
TGEDHVVLGGTAGNDIIISSEGDDTLYGDAGDDLLEGGAGNDAVLGGAGDDIITDSFGDN
RLEGNAGNDVIVAGSMGVAGNLILGGDGQDFIITTEDISTTFGGLGDDFILGAKTNLPPT
GNEGDDWIEKGTQDGAPGDNFAPLLGDEVIGNDIFVGGGGFDEMIGEGGDDIFVGSDAQD
KMDGMSGFDWVTNKNDRVGVTVDLSLAALAQPHGNAPNQNAGVFNPVGASPASILDRFAE
VEGVSGSAYADVLKGDDVDAVTILNHGGATGSALTNVALIRGLQQFLADAGLPTTGFATG
NIMLGGNGSDLIEGRGGDDLVDGDKWLNVRIAVYAPGDVNHTGPEIASFDSMADMIPFML
DRTYNPGQLKAVREILPGTSTGGAAFDTAVFSGLQSEYVVTQNTKGTADVADDVWTVTDT
VAGRDGVDTLLHIERLQFADSQRVLVEGVNAQPTGSPTLLDGNGGEITVGDMLTVSVAAV
RDADNISAGNPAGSLADRSVSYYWQFEADPGSGVFQDIILLPAGDLAFQSADGTSFKVSP
DLAGLSLRVKAIYQDAHGTTEVLYSQPTTVVQPGAPVVPTVATPVVDASDGGAGLHMVRS
DLNFILAQIKIAEADAAGQDILSLIPNVRAAMGLRAVDGSNNNLMNLNGNNNTQYGAADN
VFPRVTDPVFNPAEGAPAGFFGPGSPAIPGSSYQQTSGPVFDSQPRTISNLIVDQTSNNP
AAYATAYDPGADGVLNFGAAGNDDVLKDGVRIVASPGMDGQFGTTDDHDVYLFENTAADA
GLSAPFNAWMTFFGQFFDHGLDLVTKGGSGTIYIPLQPDDPLYVEGGFTNFMVVTRATNL
PGPDGILGNADDIREHTNTTTPFVDQNQTYSSHPSHQVFLRAYVMTDDGPVATGRLITNR
DLGADGRFGTADDTEIGGMATWKVVKAQARDLLGINLTDADVDNVPLLATDAYGNFIKGP
NGYPMVVMKGLDGIAGTADDQEVEGNPLAPLDLTNAVRTGHQFLADIAHNAVPVFSGGVL
APDADNVAGNAVPVNPQTGANLAYDNELLDAHYIAGDGRVNENIGLTAVHAIFHSEHNRL
VAQTMDTVLDSGDLAFLNEWLLNPVSALPVTPAEIGALVWNGERLFQAAKFGTEMQYQHL
VFEEFARTVQPRVDLFFAPTQVYDVDLDASIVAEFAHTVYRFGHSMLTETVDRFDIDFNV
IQDPASANPDQQLGLIAAFLNPLAYAASGVTPEDATSAIVRGVTRQAGNEIDEFVTEALR
NNLLGLPLDLPAINIARGRDVGIPSLNAVRREIYGQTGDTQLKPYTSWVDLVQHLKHPES
LINFIAAYGTHSTITNATTLLEKRAAAMALVFGGDGAPADRMDFLNSSGAWANVTLPGKD
GVLGTADDLKAVTVTGVDAIDLWIGGLAEAKAPFGGMLGSTFNFVFENQMEKLQDGDRFY
YLERTAGLSMNAELESNSFAKLIMANSSATHLPGLVFSDPGFYLELDQTKQYNEGLGSAD
PLGENGEQVVFRDSPLTAGPDTHYIRYAGAEHIVLGGTNGDDILVSSEGDDTVWGDAGND
RIEGGDGNDQLRGGAGDDIISDMGGDDNIQGGDGNDVLHGGNGVNLIIGGFGNDFIVTGE
DASEAIGGQGNDFILGSKANEQDMGNEGDDWIEKGTSDGAPGDNFDPLGNDPIIGNDVFV
GGNENDKFNGEGGDDIMVGSLGFGDRYIGGSGYDWSTFKDLAQGVSIDMSDRFFDVPPVP
GSGASTLVRFDIMEGLSGSAHGDFLRGDSEDATSLPTAGATGSVLTNISLIDGLAGLLAA
GATFYDGGNIILGGSGSDLLEGRGGDDILDGDKWLNVRISVRANPDGTGPEIASFNSMEP
MVPFMLNGTYNPGQLVIVREILSGTDHYDTAVYSGVSTDYSVVVDGNSVTVTDLVAGRDG
VDHLTGIERLQFSDSSQASGVGTAVNAGPTGHLAILDATTGLRDDTPVSGQLLRVSNLAV
HDADNVSATNATGAVNGPVAYYWQVEALPGSGVYEDITVVAAGEATRATGTTYRVTDDVA
GLNIRVRAVYQDAKGTLEIVDSSPNSAPSAGPTVTGLLVQNQTLTANPATIVDADGLSNP
QFSFQWQSNRGVGWVNIAGAISSTFVLTQAQVGQNMRVMVSYVDDFGVQESVASDILDPV
ANVNDAPTGALLISDTTPDQGQTLTALTGAIADIDGLGAFSFQWQQGTGGTFADIAGATA
ATFTPGFAQGNQQLRVIVRYTDGFGTLESLTSAATAAVTVPPGVVLVGTNAANTLTGTTG
NDVISGLGGNDTLNGLGGSDQLFGGIGNDILNGGDDPDFLNGEDGNDTLNGGLGADAMNG
GAGNDTFLVDNAGDTVTEALNGGTDQVQTSLASYTLGANVENLTYTGSSAFTGTGNALAN
TLTGGAGNDLLNGGAGADRLVGGVGNDTYVVDDAGDVVVEATGAGTDLVRTTLASHTMAA
NVENLAYTGVGNFTGTGNGLANIIDGGAGNDTLSGDGGNDVLNGNAGNDTLNGDAGNDQL
FGGLGDDQLRGGGGDDSLDAGGGNDTLLGEAGNDNLNGGAGDDSLDGGNGNDTLQGGDGN
DTLFGDVGTDTLIGGAGNDFLNGAAGNDTVVGGAGNDTMIATDGNDVFQFAAGFGNDLII
NFDAIAAGGQDRLDITALNITAATFGASVTIADVGADTLVSIGAADSIRLVGVADATTVT
AADFILAG