Protein Info for PP_2394 in Pseudomonas putida KT2440

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1473 transmembrane" amino acids 394 to 417 (24 residues), see Phobius details amino acids 442 to 459 (18 residues), see Phobius details PF20178: ToxA_N" amino acids 63 to 316 (254 residues), 171.6 bits, see alignment E=6.6e-54 PF14496: NEL" amino acids 1202 to 1415 (214 residues), 223.2 bits, see alignment E=7.3e-70

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2394)

Predicted SEED Role

"Leucine-rich repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88K97 at UniProt or InterPro

Protein Sequence (1473 amino acids)

>PP_2394 Leucine-rich repeat domain protein (Pseudomonas putida KT2440)
MQNNSSQPSAAVDTLAMAQACQDHYIAQRLPAWMKRLSMAEFTLLSEALPELLACRAGLA
SALARLSNLNAFARPLLQQALGAHGDLDVDRLYFRQWYTFPSHTIHYVTSRFPVVGSDYY
DIPLLEAALCNFTADQQRDQPQGNCLVDVRGARRSELSAPGFARLCRALDLGQKYQAHLD
SVLQPEVRGLLTRRQRYSMLVDALQARAQGILSADELQWVVALCTKDTLGKLEGASVRVR
QLAVFGCRLQQIVVLDVIDAGLLFNTSKRVLVYVPGDPHGPWSVRSDLEDYARRVLGKRL
REDDYRRFFNRFVRRRDSQRFFSAVSERLDDVPSWATRDLDEQTFAYRLPLFEHLADDWV
ARIKDDAAMIAPPVALLDREVQAEHARRLRAEGWTLLGVAGFFVPGIGAVLLGVMAWELL
EQTFQAVGDWQENERNAALAHLLNVGKGLLAVGATVAVVATARRAWSVVDNLVPAQLENG
EEKLWNADLGPYRCESPPDTAVPDMEGVHRVGERRWISMDGHWYEMTWHNDDEQWQLLPY
QGYAPPLRHNGAGAWRLWCEQPAEWGDTRQLFRRLGGSFSDLDDAQIDRSLAIHGLDDQH
LRAWHVYGRPPEAALLDTVTRVRLAGRIGTLVNQLREGGVTADPQLLERVMRLPQAAGKE
GAALADVAWAGRRELLQALYEEQNPDTETGRLLRQNFASLHRLAADEVLRDASEDDLQLL
RETGRVPLLMAEAARLQVARIRMARVYEALCIDTPQNLDLARVVLNLLVHVPGAGGPGWR
LYDGDASEPLLTVEGSAQTFDLLHRHGLFRLRAPTHTVAGERGELFETLAAAYDDASQAA
IGQGQPFVPALRQALTNVAFDQRQTVVNLLRLEQPSGSFLAPQRLADGRIGYPMAGGRLW
GALGRNRPRALQARLRDLYPAFTDEQIGRWLASIDAQARLSMLEQQYGVLKRHLTQWARS
ALLSPELAARREFRKGLINCWRCLVPELQGQAALDDGRFMLTQTISRLRHLPALPAQVGF
PHVSILALRAMRVEHVPDEFLRAFPNLRNLEITHCRLTRLPLPLMLAQKLEVLDLSGNQI
TLDQGQALVLADCRSLVYLNLSDNPLRRAFSVQAMTELNALYLSNTQMPGFPYGLMDAPE
LHTLNLSDNRISELPEGFHQSQLWRSGRVELSGNPLEGAHDGVSTWHLLEASRVPYRLRI
LDALPGERRDEMAALWAHLEAEQQSEEFFNTLSMLTESGAFSFSSTASALAARVFDMLQA
MSEHDVLRQELFEHAAATGCQDNATARFADLELRVMIWRTRHSGSARPERALLKLGARMW
RLAVLEQIAAEHAYRVGAGAESIEFALAYRIGLRKSLDLPGQPDEMLYAGIPALSNQDLL
LARERVLARQTREGIADYLSRQWFWQDYLHKTFPVRLQVPPSMHAELERLMALGNREEDI
ARLQTSNQQREHAVLLQLTLEALDRNTVQRPLS