Protein Info for PP_2370 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF06073: DUF934" amino acids 55 to 161 (107 residues), 152.2 bits, see alignment E=2e-49

Best Hits

KEGG orthology group: None (inferred from 99% identity to ppg:PputGB1_1977)

Predicted SEED Role

"Oxidoreductase probably involved in sulfite reduction"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KC0 at UniProt or InterPro

Protein Sequence (164 amino acids)

>PP_2370 conserved protein of unknown function (Pseudomonas putida KT2440)
MQRIIKNNQIVDETWHLLPKETSFDELTNCDDYIVPLQMWRDHAHVLKARDGGLGVWLDS
DQEAEEIGEDVHHFQVIALNFPAFTDGRSYSNARLLRDRYKFKGELRAIGDVLRDQLFFM
ARCGFDAFAIRADKDPEDALQSLKDFSVTYQAATDEPLPLFRRR