Protein Info for PP_2279 in Pseudomonas putida KT2440

Annotation: Head-to-tail joining protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 PF12236: Head-tail_con" amino acids 12 to 475 (464 residues), 380.2 bits, see alignment E=6.6e-118

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2279)

Predicted SEED Role

"Phage collar"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KL1 at UniProt or InterPro

Protein Sequence (524 amino acids)

>PP_2279 Head-to-tail joining protein (Pseudomonas putida KT2440)
MAKTEQEPERGLAASLYAKLAPDRETFLQRARDCSKYSIPTLIPPAGHASGTKFYTPWQA
VAARGVNNLGAKLLMALLPPNSPFFRLEIDEFTEEKLTSNPQMHADVQAGLAKIERAVQT
EIETTAIRVTGFELLKHLIVGGNGLVYLPQQGGMKFYPLDRYVVRRDPMGNVLDIVVKEE
VSLAVLPEEARSLVEPGDDSGDTPRDHNKNVSIYTHITLKGETWNVYQEVKGQIVPGSRG
TYPKDKCAWLPIRFVKIDGENYGRSYVEEYLGDIKSLEGLSQAIVEGSAASAKVLFLVNP
NGVTSSSELAEAPNGEFVDGVASDVQALQLQKSGDFRVALETINTITERLEFAFMLNSAI
QRNGERVTAEEIRYMAGELEAALGGVYSILSQEFQLPLVNRIMFSMQRRKKLPELPKGTV
SPTIVTGMEALGRGNDLTKLDQFISTIMQIPDAASRINWGNYMTRRATALGIDTDGLVKT
DQEVQQEQQQQQMQQAMQSGVAPAVQAAGRMMEKGQPDGSQAQT