Protein Info for PP_2212 in Pseudomonas putida KT2440

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1481 PF20178: ToxA_N" amino acids 54 to 294 (241 residues), 127.6 bits, see alignment E=1.8e-40 PF13855: LRR_8" amino acids 1007 to 1064 (58 residues), 32.8 bits, see alignment (E = 1.2e-11) amino acids 1072 to 1113 (42 residues), 31.4 bits, see alignment (E = 3.3e-11) PF14496: NEL" amino acids 1197 to 1418 (222 residues), 231.9 bits, see alignment E=1.6e-72

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2212)

Predicted SEED Role

"leucine-rich repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KS7 at UniProt or InterPro

Protein Sequence (1481 amino acids)

>PP_2212 Leucine-rich repeat domain protein (Pseudomonas putida KT2440)
MIINATGHDRFIGARLPEWLKRASRGQINTLRTSLNAHHASQARLSGLTLELLPLQQFAE
KHLAALLDAPLPDGQVFAQLEWLRVAPRFGTLPGTLQQTYGYSQTRENGLLRLMRNFAAN
TRYYEGTGLVLSGSDKPLNASLEALITACRNLDVGQRYQDALQRIFPPATQAVLAEDKRS
GLKLATELAALQGNISVDVQLALREVVDPAQEGRQKGLEGKPMLLRAIGRPVVDGLLIHL
QDKAGNERGIVLYLPGDPRQALRFFDNVASMNSTVAMLLQDPGYWQFFTQLISLEHRAGF
VSTLGKRLKDKLPDLELEGETPGGGVFTQLATRQVQRVKEDARLLLVPTADADSRAVSAR
HAEWKAAGLDLVNLAGLFIPAVGGVLLGQVVAQTCAEVFEGMRDWSKGHQHEALQHLLGV
AETLAATAATVAGVSFVRSAFVAGLEPVSLGNGRSRLWQFNARNYRSLPGPVDLLEEERG
GEAGRRWVRIDGRYLEVHQPVVDGPYRLRHAASEGGYGPVVLHNGERGWQLMREQPLSWQ
APARMLDALWPQLSPVDAHQAEQIMRVAGIDADLLRGVLVENRPAPVSLGQTLRAFQAHA
RIERFFQRVRLKALMPSDRELLAWCEARPGVGAGLEQMQVHEAGLRPQLFARLTEQSLAA
DPLSMLVKRDFPGLPSAYINEVTGQAHELEHQMARVERRLPLPCAKNARSLLRLARLSRG
LAGLYLSTAYSDVTGELALALLDSFELEQLDLDLRDRGLDGRSIRRLGSGGRTEARRIVV
RHEGRFLIYNGSGLPHVFIADEPGCIFEALSAALTSEQRAAMQLVGSAAARQLREKLLAR
LPATHWDIARMLGWPEEQAWLNPGRRMDDGRVGYPLSGRPGAAPRDERAIIRDQLRSLYP
GLDEAALDVELARVQQGPQPVFERLVELQEAHDQLVLYLNRWVGAELQEGRRAARRLTAD
SILRAWRLQGEPVSAGEGQTQGQRLSMSGLSLRTLPALPPHIDFHRITLLSVNDTLITDI
PADFLRPFTALTHLNLNNNALMRLPTGIAHLPNLQSLRLAHNEIRLDAQAISVLHGLSNL
VHLDLSHNRLEALDMSFHQLSRLTSLNLRHCRLGSWPRRLELCGLLERADLRNNQLREVP
TEIQLMPYAFRQAILMEDNPLSVMQQRRLYALDVIEEHRHSPEQLGSVDLARARTRWVGH
TDATVQAEREAVWLRLLEQAGSSGLFRLLARLEMTADYSQAGEGRDALVDGVWTLLATLD
GDPVLCRRIFERAGLPLSCLDAVASHFSALQVLVRQAQAEAAAVNPERRGELLELGRQLF
RLDQLEGIAYQDGRQRLAASEHVDQLALGLAYRVQLRSRLRLPNQPYAMRYPDAVALTQA
QVEDAFLRVTRAQTIEGLTDSLSQRAFWRRYLRQQHDQMFDALSADYTRRTLELQAQRPV
LAPAAFEQQLRRLQEQQDLDIERLVAGLTQSYLRAAERAEG