Protein Info for PP_1993 in Pseudomonas putida KT2440

Annotation: putative motility protein fimV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 388 to 408 (21 residues), see Phobius details amino acids 570 to 586 (17 residues), see Phobius details PF01476: LysM" amino acids 154 to 207 (54 residues), 23.8 bits, see alignment 3.5e-09 TIGR03505: FimV N-terminal domain" amino acids 160 to 231 (72 residues), 95.8 bits, see alignment E=1e-31 TIGR03504: FimV C-terminal domain" amino acids 867 to 910 (44 residues), 70.4 bits, see alignment 9.7e-24

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 100% identity to ppu:PP_1993)

Predicted SEED Role

"Probable type IV pilus assembly FimV-related transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LE1 at UniProt or InterPro

Protein Sequence (911 amino acids)

>PP_1993 putative motility protein fimV (Pseudomonas putida KT2440)
MLRIRKLVLAMAAASALSSGMANALGLGELTLKSAQNQPLDAEIELLDVRDLKAAEVAPS
LAPPEEFSKAGVAFPTYLEDLTFTPVINPNGKSVLRVTSSQPLPGPVVKFLVQVMWPQGR
LLRDYSVLLDQAKAQGEQPAAGNVTPAITGASSYTTQRRDTLWQIAARNTQGGSIQQTMI
AIQALNPDAFIGNNINQLKVGQVLRLPDQQQIQSIAQGEANREVAEQYAAWREGRRLGPR
ARQLDATRRGAAEAAPSRIAQGDNLRLVSPGNQAGAGQAKALNDELAMAQESLDTSRRDN
EELKSRMADLQSQLDKLQRLIELKNNQLARLEGQGAAASAAAADTPEQPVVNPAPAAADT
APQPVPDTQPAPASQPKGALDSVLGNPWLLGVIAGSSILVLALLLWLLARKRKAQQEAEK
HLRMARALEEEQGAGFDSDIESFGGVEAPEPGVTLSPAVVAASAAAAVAAEKVAEPVAEA
APEPEPQADPHAALLAQVDQCLAEGRLNRATELLEPAVAAAPERDDLRLKLMDVYARQGD
QSAFAEQERQLPASEQNVAEVAGLKERYPAMLGLAAAGLGAAALAAEMDEQYVQELLHDE
PKAPVVADVVPDELSGFEPQEQAEPEVVAQAAPDAELDAFDDVPTLDATDLAEQDLDSAF
DLSLGEDLADQDPLAASVLDEPMAQGGVPDELIIAEPVLDEPVQEEAQPEEQPFAVDAEL
QADADADFEAMLAQAEPQPAVDLSDFDLDVSEPVAPAAPEALEQDPLDVTAELAAFDSEP
EFDPVSEFDLPSDFDLSLSLEDDSPAAKSFASELNDVNAELDKLSQSLETPSLEPHFTSE
DAVAQPEPEPLDDLDFDFFSGSDEVATKLDLARAYIDMGDSQGARDILDEVVKDGDDSQR
QEAEDMLSRLV