Protein Info for PP_1940 in Pseudomonas putida KT2440

Annotation: Methyl-accepting chemotaxis transducer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details PF00672: HAMP" amino acids 383 to 435 (53 residues), 35.2 bits, see alignment 1.3e-12 PF00015: MCPsignal" amino acids 526 to 683 (158 residues), 143.4 bits, see alignment E=6.7e-46

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to ppu:PP_1940)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LJ2 at UniProt or InterPro

Protein Sequence (716 amino acids)

>PP_1940 Methyl-accepting chemotaxis transducer (Pseudomonas putida KT2440)
MSFSKISIQLKITLLAGLCLVGVVSLLMGLSLYRIEHNSDLVKFSSMKMLSDAAQSHIES
QGEIQTLIIRRQFTDAYQYGNGFSRHMQQLLLNQVENSPFQPSAFRESIVFQAKTVLQAN
PGLLGISLVFEPNALDGKDEIFVGNTALGSNDKGRFALNWTQSNTGQITSIVISENELDS
AKNASSINQNGTRNTCSRSALKPCVFEPFFSRVNGQKTLVTSIVFPLLVDNKRVGSLLVD
ISLDGLQSVSQDTSRKLYEGQAGISVITPSGLLAGHSPDVRLVGKYLNAIDSDDAAELVR
LLNTEPGKHSLKGEARMKTLVTFEPIPDDAPWGVLLDIPESVLIEPAEVLRRQLDQRNTT
GSLVELGLGLLAAIVGLLFIWMMARSVTKPILRVAYMLRDIASGDGNLTLRLAYEKQDEL
GELVAWFNSLLDKLQPTIAEVKRSVQAARATADESAAIARQTSNGMEEQSRQVHLVVTAS
QEMNATAQDVARSAAQAAKAACDADQATREGLSVIGRTTSSIDHLAADMSEAMSQVESLA
THSEKIGMVLEVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLARRTQESVE
ETRIVIEHLQSGTESVVTAMSKSQRLASGSVDQVSQAVTALSQIGDAVTVITSMNLQIAS
AAEEQNAVAEEINCNISIIRDVTESMSDRASESARISDSIYKLANQQQVLMNQFRV