Protein Info for PP_1793 in Pseudomonas putida KT2440

Annotation: Glycosyl transferase, group 2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 862 PF13641: Glyco_tranf_2_3" amino acids 296 to 519 (224 residues), 31.4 bits, see alignment E=1.8e-11 PF00535: Glycos_transf_2" amino acids 299 to 471 (173 residues), 48.3 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1793)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LY3 at UniProt or InterPro

Protein Sequence (862 amino acids)

>PP_1793 Glycosyl transferase, group 2 family protein (Pseudomonas putida KT2440)
MSGLRAGHMPKGRLSGRPSFYFFSQAKLMSRQLDHGRETLMDIFHRHRLSNEGYAASVLE
RAMQTAEHRPEALVWKGMAALAHNPKLAFLFFINAAQLLPDRADVQALVGRALLAQGLAV
LATRYLTQAWQKLPDDASLRMLLWQARSQSEPPATLRSMILAHLPEINAPKELAQVIKLL
AAQADAPRRIGVVRYLETHREIQGWAIDLGNLQAPASLKIEADSVNVDAVASIPHPLLSA
AGLCTTHGGLRVSVPNPKAQVHIRFADNTHLVGSPVFAMPSFVPPIEQGTQVEQKHVDVL
IPVYNGLHETLECINSALEARKLNRTPHRLVVIEDATPVPALAKALKMLAGKGKITLVNN
AVNMGFIRTMNRAMALSPGRDVVWLNADTRVQGNWLDRLRNIAHSSADIASVTPFTNNGE
LMSFPQSQVSHAMPNAREQAALDELAKHANISPVEIETGCGFCLYIKRAALNQVGYLDEV
YLARGYGEETDWCLRARSFGWRHMGAPNVFVAHQGGISFGAEKTLRVAHNNAILRRRYPG
ASARYSAFCLRDPIKAARDALQRARLARFAQQSDEQKASQWPMEAGNTLHIHDGTGADST
LSLVWHRDSHRTWVTLKAPLAPLPLELDYEMPGEFSELVQNLATLPLKGVVLEHQVQCPS
KLCDLPSLLNIPYTIVHRDGHLQGLDATYDWQRLANRAESVVLPWQSWHSAFAEAFPQAN
LVIQPCAELPTPATSQPNILLIGDALDDTDIIQTWVRLGRRITRERLPLTLLVKQDTPWL
KTLSATGAVQALPQVTGFSLPEIAKATGCDAVVSLAASPGEKWLAPELASQLDLPLYTRC
HSLGTEAGATCVTQLPFSLSQA