Protein Info for PP_1792 in Pseudomonas putida KT2440

Annotation: Glycosyl transferase, group 2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 PF13641: Glyco_tranf_2_3" amino acids 508 to 717 (210 residues), 60.2 bits, see alignment E=2.8e-20 PF00535: Glycos_transf_2" amino acids 511 to 685 (175 residues), 64.1 bits, see alignment E=1.6e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1792)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LY4 at UniProt or InterPro

Protein Sequence (809 amino acids)

>PP_1792 Glycosyl transferase, group 2 family protein (Pseudomonas putida KT2440)
MTQNVLNERPAGQKPVALSSFRGCINGLYGDVLQGWAIDITQPDQRPVIEVFVDGASVAL
ARADQHEPNAPHGDHFHGFTVQLRQSLLADANRITAQIANTGIHLEGEIELPSQPPQETA
AVASQVWHTGGLRVGGWSWDPQAPHRHVVVTLREGSRVVAQVTCNTHHQALAYRATSDHG
FAIDLPWELADGKLHVIEVTNDLGQSLPGSPIRLRCRPEGLEGLLHQLELKPDAAMQALV
AEVAKEQSSRLPKSAGWQHYPRWYDAFQKREPIAAIPSRFRPGLLLLSEGDATLEKISLD
SLGDDAESVHQLAKAAPADLLPAVEQLLAAGCDSIIQIAAGDKLAPRAMAQLRNLLEEGC
AWAYADCDRDGPQGQRSQPWFKPVWDIDLFIGADIFSTGAIFSAAIVKEALALLKAGKKQ
SAINRHDLIAGIALATELNGRSVTHLPRVLYHRSSDTCTSPEQAAPSKQRKDAVAWLCQG
LAPGAHVSAVPDYPALLRAHWPLPEQLPRVSLIVPTRDQYKLLHACIEGLLNNTDYPDLE
IIVVDNQSTDPQTLAYLAELKQRGVKILAHPHPFNYSTINNRAASAATGELIGLVNNDIE
IIESGWLKEMVSQALRPGIGAVGAKLLWPNRMVQHGGVVVGVNGLAAHAGNTLEQRDAGY
LGMNQVTRRQSAVTAACLLLRKSLFDSIQGLDERAFPVAFNDVDLCLRIHELGLRNVWTA
FAQLIHAESASRGKDISPEKMARAQREQQLFTERWSVSYRDPYYHPALSLDYLTGPYGGL
SLPPEPEYCAPRKLASSETHGHIYLADPS