Protein Info for PP_1786 in Pseudomonas putida KT2440

Annotation: putative Glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1147 PF00534: Glycos_transf_1" amino acids 541 to 709 (169 residues), 31.9 bits, see alignment E=2.9e-11 amino acids 960 to 1100 (141 residues), 67.4 bits, see alignment E=3.6e-22 PF13692: Glyco_trans_1_4" amino acids 564 to 694 (131 residues), 29.4 bits, see alignment E=2.6e-10 amino acids 970 to 1096 (127 residues), 55.5 bits, see alignment E=2.3e-18 PF13524: Glyco_trans_1_2" amino acids 642 to 718 (77 residues), 41.1 bits, see alignment 5e-14 PF13439: Glyco_transf_4" amino acids 755 to 953 (199 residues), 50.9 bits, see alignment E=5.8e-17 PF13579: Glyco_trans_4_4" amino acids 756 to 951 (196 residues), 68.5 bits, see alignment E=2.7e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1786)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LZ0 at UniProt or InterPro

Protein Sequence (1147 amino acids)

>PP_1786 putative Glycosyl transferase (Pseudomonas putida KT2440)
MSVKEGLPSVDVQPSMHVKGNSVPVPQKKTGSRRFVLDLAYYRNRYPDLSSLTDDALEQH
WHAFGHQEGRYASASHESGDAELIAEAVLNAADSAVMVKPDVAKVDLDFYLTFYPDLKAG
GVETQAIAEAHFQRFGRAEGRLPTLDAWAKKHELPLELLPNGFSLSAAIDRSAKRGLEVE
PQRVMGIFLGQDVIPIDLAETPQKSQLVFSKLGMHYLSRHKVQEGRILLEAALSIAPSAE
VFNRLGGSYMEDGHFSIALQYFNAAAQLPNPPVWTAFNQAHCLAKLHQLDEAIRVLSAGI
ATNPNHRPQQDELERLAEQKWRDLHAKLMTRVDMLDRESLINEAYAYAVDLYRAYLPVYG
DLSEGAAHDLPALPPLGNLNTDRVLIVGDFHIAQCVRYRIEQKIEQLEAVGKQVTAISWT
ELDKNQNALALHDVVIFYRVPAVVQVIKAIAQVNATGKLSLYEIDDLLFVPEYPPSIDSY
GGYVSLATHRELTRGMALFNAAARLCRQGIASTEPLRLELAKLVREKQCWLHRNGLDRLN
QIRTNDKSHKKTIDIFYGSGTQAHNTDFIEQALPAIERVLNETPQARLVVVGYLRLPVSF
TAKYAQQFTQLPAMDSVQGYWSLLEQADINIAVLHDDKVNACKSELKWFEAGCFGIPSVL
SSTANYRDVVKDGEDGFLATTEEEWYRALKKLADSQALRQQVGQAAQKRAQDDYSLQALG
SKLAATLDDFVRGIQKAKPRKKIALVNVFFPPQAIGGATRVVADNFSEFRSAYAEDLDVC
VFTADVECRAAHQMTVYTYEGCRVYRSTTLWREHMDWHPKDPEMYRLFQEFLELEKPDLI
HFHCVQRLTASIVEAARDAKIPYMVTIHDAWWISDFQFLVDHNSKVYPDGHPDPYELIEM
PTNMTLADSIERRRDLKDLLHSASRVLTVSNAFAEIYRRNGIPQIEVVANGVSSDIPWTQ
KDTSYTKRVVCGHIGGMSEHKGYYLLKEAVLQSQPENLEFLIVDHSKEEGYEHHSQWGKV
PVTFIGRVSQKGIVDLYGKIDVLFAPSMWPESFGLVTREAVASGCWAVASSMGGIGEDIV
PNKNGYVIEPSTEALVLTLKHISSSIAQHKAASDTEVRRTSASQAMELKKLYMTLKDGDA
VGRKLIK