Protein Info for PP_1720 in Pseudomonas putida KT2440

Annotation: Alcohol dehydrogenase, zinc-containing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 TIGR02824: putative NAD(P)H quinone oxidoreductase, PIG3 family" amino acids 6 to 314 (309 residues), 389.8 bits, see alignment E=4.5e-121 PF08240: ADH_N" amino acids 24 to 82 (59 residues), 35.1 bits, see alignment E=1.6e-12 PF00107: ADH_zinc_N" amino acids 146 to 262 (117 residues), 67.1 bits, see alignment E=2.3e-22 PF13602: ADH_zinc_N_2" amino acids 197 to 312 (116 residues), 47.4 bits, see alignment E=6.2e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppf:Pput_3999)

Predicted SEED Role

"Oxidoreductase, zinc-binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88M54 at UniProt or InterPro

Protein Sequence (320 amino acids)

>PP_1720 Alcohol dehydrogenase, zinc-containing (Pseudomonas putida KT2440)
MKALQGVDGHVEWVEAERPTCDAGQVRIRVAAAGLNRADLLQMKGLYPPPPGASPYMGLE
CSGVVEEVGAGAAWRVGDRVCALLASGAMAEEVVVDARHVLPVPEGLGLHEAAALPEVYA
TAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSQDRLAYCQALGA
AGGVVRNENLDALEGFGPFDVILDPVGASYGELNLKLLARDGRWVIIGLMGGRKFELDLA
QVLGKRLEITGSTLRNRDDGFKAELLRELQQQVWPLFAEGRLSPQLVDTYPVEFAQAAYA
ELETNQVSGKLVMVIDPSLV