Protein Info for PP_1698 in Pseudomonas putida KT2440

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 381 to 402 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 321 (296 residues), 128.7 bits, see alignment E=2.5e-41 PF00083: Sugar_tr" amino acids 50 to 204 (155 residues), 61.7 bits, see alignment E=6.2e-21 amino acids 225 to 413 (189 residues), 42.9 bits, see alignment E=3.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppf:Pput_4022)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88M76 at UniProt or InterPro

Protein Sequence (424 amino acids)

>PP_1698 Major facilitator family transporter (Pseudomonas putida KT2440)
MFSWYREITSRERKTFWACFGGWSLDALEVQMFGLAIPALIAAFSLTKGDAGLISGLTLV
TSAIGGWLGGTLSDRYGRVRTLQWMILWFSFFTFLSAFVTGFYPLLFVKAMQGFGIGGEW
AAGAVLMAETINPKYRGKVMGTVQSAWAVGWGLAVALFMLIYSLVPQEFAWRVMFFVGLL
PSLLIIWVRRNVPEPDSFQRLQKEKAIPSSFLQSMAGIFRPELLRVTLLGGLLGLGAHGG
YHAVMTWLPTFLKTERNLSVLNSGGYLAVIILAFWCGCVVSGLLIDRIGRRKNILLFALC
CVLTVQAYVFFPLTNTQMLFLGFPLGFFAAGIPASLGAFFNELYPADVRGAGVGFCYNFG
RVLSAVFPFLVGHMSESMSLGSAIGIDAGIAYGVAVIAALCLPETRGRNLESAPAPETAG
AVAK