Protein Info for PP_1696 in Pseudomonas putida KT2440

Annotation: putative Membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 126 (26 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 303 to 327 (25 residues), see Phobius details amino acids 340 to 363 (24 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 347 (332 residues), 113.3 bits, see alignment E=6.2e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1696)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88M78 at UniProt or InterPro

Protein Sequence (392 amino acids)

>PP_1696 putative Membrane protein (Pseudomonas putida KT2440)
MLAAIKRYPHTVRLLLTTTFTLTVARALTLPYLVVYLADNFQLPISQIGLLIGGALIVAS
LLSLYGGHLVDTLSNHTLVSASTLLFALAFVGAVASRSALPFFFCLVLINLALAVVDIAA
KAGFCALLPVDERAEVFAIKYTLSNVGYAAGPLLGVAMLELNDHVPFLASALLGLAMCLA
YWRLGDRSLQASAPDKPAAGFGQVALGLARDRRLVCFTVGGVLSAVVFGQFTAYLSQYLV
VTSNPAEAARLIGYLVTTNAVTVIALQYLIGRRISRQRLMPWLLAGMGLFIAGLLGFALA
GSVLAWCLAMLVFTLGEIIVIPAEYMFIDLIAPEHLRGVYYGAQNLSNLGAALGPVMVGF
ALVHLWPGAVFYLLVLSVILAGVFYWLGTRRG