Protein Info for PP_1577 in Pseudomonas putida KT2440

Annotation: Phage tail tape meausure protein, lambda family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 648 to 671 (24 residues), see Phobius details amino acids 676 to 700 (25 residues), see Phobius details PF09718: Tape_meas_lam_C" amino acids 584 to 656 (73 residues), 62.6 bits, see alignment E=1.5e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1577)

Predicted SEED Role

"phage tail tape meausure protein, lambda family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88MJ4 at UniProt or InterPro

Protein Sequence (813 amino acids)

>PP_1577 Phage tail tape meausure protein, lambda family (Pseudomonas putida KT2440)
MASRSLGTLTLDVIAQVGGFVAGMDKAERSSEKWRKQVEKNAKAVGTAVGAGLATGITAI
TAMTVSAINSASEITNLASVANVSTTDFQKLAVGAKTVGVEQDKLADILKDVNDKVGDFL
NTGGGGMADFFEQVAPKVGVTADQFRNLSGSQALGLYVSTLEKAKVSQSDMTFYLEAIAS
DATALLPLLRNNSEGFKRFGDAAAAAGSIMDEKTIRAAQELKAANWLVEQSISGLGNQIT
SAMLPTLANFATRLSDTTINGVLAKRVSDDLAASFRALGKFAVGTVAGIHLLGVGLKTLS
DVDNAMVGGDDAKWYDRYLPPVRIYNAFKNVDAIGKTISGAKAQMDGLATGYGSLIASFD
EKPGQGSTNQIKELADLLARLREGQAGSFTALTTDQQAAAKAAEAAAKKLLGQFDTAEEG
YKRQIALINTETDKRKEATEVAKLQFELESGNLAGLSAKQQERLKGLAAELDQLKKLKQA
KEDDKEVAGFDASVKRQLDIDQRALDAPLLNAYSTDEMKQRVLDLLAIEQDYQDQLEDLR
QRHEAGDVSDSVYERETEILSDALEKRRAMQEKYYQDVDAMQQNGTAGFISGFATQAEAA
MDLYSNMQSVGSAAFSSLTDMLTEWAETGKLNAKDFAATFIQSIGHSLLAYAAAQVAMAG
LNAFTAMIGVPFVGPAIAPGAAIAAAAAAGVLMTGVGSALSGQAHGGMENIPREGTWLLD
GGERVLSPAQNRDLTGYLQRANSVDATSKPGGGAMNVEVHNYAPAQVDVQQDGDRMKVFI
REAKKQIAGDLARGNGDVSKALSQGWGVKRAAR