Protein Info for PP_1457 in Pseudomonas putida KT2440

Annotation: Phosphoribosylglycinamide formyltransferase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01142: phosphoribosylglycinamide formyltransferase 2
  • amino acids 14 to 392 (379 residues), 635 bits, E=2e-195
• PF22660: RS_preATP-grasp-like
  • amino acids 17 to 109 (93 residues), 34.3 bits, E=6.5e-12
• PF02786: CPSase_L_D2
  • amino acids 121 to 204 (84 residues), 29.7 bits, E=1.2e-10
• PF02222: ATP-grasp
  • amino acids 121 to 300 (180 residues), 195.7 bits, E=1.3e-61
• PF07478: Dala_Dala_lig_C
  • amino acids 139 to 284 (146 residues), 31.8 bits, E=2.7e-11
• PF21244: PurT_C
  • amino acids 321 to 389 (69 residues), 102 bits, E=2.5e-33

Best Hits

Swiss-Prot: 100% identical to PURT_PSEPK: Formate-dependent phosphoribosylglycinamide formyltransferase (purT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K08289, phosphoribosylglycinamide formyltransferase 2 [EC: 2.1.2.2] (inferred from 99% identity to ppg:PputGB1_1062)

MetaCyc: 69% identical to phosphoribosylglycinamide formyltransferase 2 (Escherichia coli K-12 substr. MG1655)
GARTRANSFORMYL2-RXN [EC: 6.3.1.21]; Acetate kinase. [EC: 6.3.1.21, 2.7.2.1, 2.7.2.15]

Predicted SEED Role

"Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)" in subsystem De Novo Purine Biosynthesis (EC 2.1.2.-)

MetaCyc Pathways

• superpathway of histidine, purine, and pyrimidine biosynthesis (44/46 steps found)
• superpathway of purine nucleotides de novo biosynthesis I (21/21 steps found)
• superpathway of purine nucleotides de novo biosynthesis II (24/26 steps found)
• superpathway of 5-aminoimidazole ribonucleotide biosynthesis (6/6 steps found)
• 5-aminoimidazole ribonucleotide biosynthesis I (5/5 steps found)
• 5-aminoimidazole ribonucleotide biosynthesis II (5/5 steps found)
• superpathway of tetrahydrofolate biosynthesis and salvage (10/12 steps found)
• Bifidobacterium shunt (12/15 steps found)
• pyruvate fermentation to acetate II (3/3 steps found)
• superpathway of acetate utilization and formation (3/3 steps found)
• acetate and ATP formation from acetyl-CoA I (2/2 steps found)
• tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate (2/2 steps found)
• mixed acid fermentation (12/16 steps found)
• ethanolamine utilization (4/5 steps found)
• hexitol fermentation to lactate, formate, ethanol and acetate (14/19 steps found)
• pyruvate fermentation to acetate and (S)-lactate I (3/4 steps found)
• pyruvate fermentation to acetate I (2/3 steps found)
• pyruvate fermentation to acetate IV (2/3 steps found)
• pyruvate fermentation to acetate VII (2/3 steps found)
• L-threonine degradation I (4/6 steps found)
• glycine degradation (reductive Stickland reaction) (1/2 steps found)
• acetylene degradation (anaerobic) (3/5 steps found)
• pyruvate fermentation to acetate and lactate II (2/4 steps found)
• superpathway of L-threonine metabolism (12/18 steps found)
• acetyl-CoA fermentation to butanoate (4/7 steps found)
• purine nucleobases degradation II (anaerobic) (16/24 steps found)
• reductive glycine pathway of autotrophic CO₂ fixation (5/9 steps found)
• superpathway of Clostridium acetobutylicum acidogenic fermentation (5/9 steps found)
• (S)-propane-1,2-diol degradation (2/5 steps found)
• lactate fermentation to acetate, CO₂ and hydrogen (Desulfovibrionales) (4/8 steps found)
• methanogenesis from acetate (2/6 steps found)
• superpathway of L-alanine fermentation (Stickland reaction) (4/9 steps found)
• superpathway of fermentation (Chlamydomonas reinhardtii) (4/9 steps found)
• superpathway of N-acetylneuraminate degradation (12/22 steps found)
• L-lysine fermentation to acetate and butanoate (3/10 steps found)
• (S)-lactate fermentation to propanoate, acetate and hydrogen (5/13 steps found)
• purine nucleobases degradation I (anaerobic) (6/15 steps found)
• gallate degradation III (anaerobic) (3/11 steps found)
• superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation (6/17 steps found)
• superpathway of L-lysine degradation (23/43 steps found)
• superpathway of methanogenesis (2/21 steps found)

KEGG Metabolic Maps

• Nucleotide sugars metabolism
• One carbon pool by folate
• Propanoate metabolism
• Purine metabolism
• Pyruvate metabolism
• Taurine and hypotaurine metabolism

Isozymes

Compare fitness of predicted isozymes for: 2.1.2.2

Use Curated BLAST to search for 2.1.2.- or 2.1.2.2 or 2.7.2.1 or 2.7.2.15 or 6.3.1.21

Sequence Analysis Tools

See Q88MW1 at UniProt or InterPro

Protein Sequence (393 amino acids)

>PP_1457 Phosphoribosylglycinamide formyltransferase 2 (Pseudomonas putida KT2440)
MTRIGTPLSPTATRVLLCGCGELGKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVN
MLDGVALRAVIEAEKPHYIVPEIEAIATATLVELENEGFTVVPTARATQLTMNREGIRRL
AAEELDLPTSPYHFADTYEDYAKAVADLGYPCVVKPVMSSSGKGQSLLRSDADLQKSWDY
AQEGGRAGKGRVIVEGFIDFEYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMS
PKALAESQRVAKAVTDALGGRGLFGVELFVKGDQVWFSEVSPRPHDTGLVTLISQDLSQF
ALHARAILGLPIPVVRQFGPSASAVILPEGQSQQTSFANLGAALSEPDTAIRLFGKPEIN
GTRRMGVCLARDESVELARAKATRASQAVKVEF