Protein Info for PP_1279 in Pseudomonas putida KT2440

Annotation: Probable alginate O-acetylase AlgJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF16822: ALGX" amino acids 84 to 349 (266 residues), 333 bits, see alignment E=8.4e-104

Best Hits

Swiss-Prot: 100% identical to ALGJ_PSEPK: Probable alginate O-acetylase AlgJ (algJ) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1279)

MetaCyc: 55% identical to AlgJ (Pseudomonas aeruginosa)
RXN-16462

Predicted SEED Role

No annotation

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88ND3 at UniProt or InterPro

Protein Sequence (388 amino acids)

>PP_1279 Probable alginate O-acetylase AlgJ (Pseudomonas putida KT2440)
MMTMTRTLRITYSLSFLGLLVGMGAWSTGGLQSFQRTEQMTLLNGKLAKAAETHYDAEFP
IKRLGTNVWAAMDFKLFNEGRPGVVLGRDQWLFSDEEFKPTAGAEQLMQENLALIRGVRD
TLQQHGSQLVLAIVPAKARVYTEYLGKERPASLHDDLYNQFHAQARQANVFAPDLMAPME
QAKARGQVFLRTDTHWTPMGAEVAAQALAEAVSRQSLLNGDPQAFITEAGNTAPYKGDLT
NFLPLDPLFSNLLPAPDNLQKRTTRPVDAEGDAGDALFADKQIPVALVGTSYSANPHWNF
LGALQQALRSDVANYAEDGHGPLLPMLKYLQSDAFKNAAPQVVVWEFPERYLPMKNDLSS
FDPQWIAQLKNSRKSEENLALSSTRTDH