Protein Info for PP_1202 in Pseudomonas putida KT2440

Annotation: putative enzyme involved in modification of phospholipids

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 185 to 208 (24 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 267 to 284 (18 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details amino acids 318 to 335 (18 residues), see Phobius details amino acids 350 to 374 (25 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details amino acids 420 to 439 (20 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details amino acids 476 to 499 (24 residues), see Phobius details amino acids 521 to 541 (21 residues), see Phobius details amino acids 859 to 877 (19 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 43 to 328 (286 residues), 40.4 bits, see alignment E=2.6e-14 PF09924: LPG_synthase_C" amino acids 565 to 852 (288 residues), 319.9 bits, see alignment E=1.4e-99

Best Hits

KEGG orthology group: K14205, phosphatidylglycerol lysyltransferase [EC: 2.3.2.3] (inferred from 100% identity to ppf:Pput_1231)

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.2.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NK5 at UniProt or InterPro

Protein Sequence (880 amino acids)

>PP_1202 putative enzyme involved in modification of phospholipids (Pseudomonas putida KT2440)
MTSHNPEPPVPLATALPGAVQRLPLLERLSRYRQPIGLMVTLLLFTMALIACRHLLSELD
IYALHDAMLSVPTQSLLGALLATVIGFVILLGYEWSASRYAGVKLPARSLALGGFSAFAI
GNAIGLSMLSGGSVRYRLYARQGLGAGEVARMTVFASLSLGCALPPLAALATLSNLPAAS
TALGLAPGLLAAVASAVLVVSALLVIGLYRRRLAEQPAANNLLVQLGRRTLRLPDARLAA
LQLLITALDVAAAATVLYLLLPEAPPFGAFVLVYLLALAAGVLSHVPGGVGVFEAILLAA
FADQLGAAPLAAALLLYRLIYVVLPLLLACVLLLANEARRLLFAQQAIKAASGLAAPILS
ILVFLSGVVLLFSGATPEIDTRLEHMGFLVPHRLIDASHFGASLIGVLCLLLAQGLRRRL
SAAWLLTTVLLLVGALLSLLKGFDWEEACLLTFTAALLALFRRSFYRPSRLLELPFSPVF
LVASACTVGASVWLLLFAYQDVPYSHQLWWQFTLDADAPRGLRAAMGSALLLAAVALTWL
LRTAPPVIHLPDEEELQRANRILQASDQPDGGLALTGDKALLFHPRGNAFLMYARRGRSL
VALYDPIGPAQERAEMIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARV
DLRRFDLEAKGKEMKDLRYTWNRGGRDGLSLEIHEPGHAPLAELKEISDAWLGGKNVREK
GFSLGRFSPDYLQHFRIALIRFQGRPVAFANLLETHGNELASLDLMRAHPEAPKLTMEFM
MIGLILHYKSHDYGRFSLGMVPLSGLQPRRGAPLTQRLGSLVFRRGEQLYNFQGLRRFKD
KFQPDWEPRYMAVPAGLDPLVALADTAALIAGGLTGLVKR