Protein Info for PP_1195 in Pseudomonas putida KT2440

Annotation: conserved exported protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF18914: DUF5666" amino acids 118 to 178 (61 residues), 15.1 bits, see alignment E=1.2e-06 amino acids 185 to 241 (57 residues), 27 bits, see alignment 2.3e-10 amino acids 310 to 368 (59 residues), 33 bits, see alignment 3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1195)

Predicted SEED Role

"FIG00960858: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NL2 at UniProt or InterPro

Protein Sequence (572 amino acids)

>PP_1195 conserved exported protein of unknown function (Pseudomonas putida KT2440)
MTLPVRYLSAVMFALVFGGNLMAPAEVAAAPVCVSRDEMGMAGAAGLQFPGGMGGTGARN
ENGGVGGTGAPVQQRPGGTGGTGAVAEGVDGTYFDQRHGDVGGTGTPILRPGGTGGTGIV
GTITGFASICVNGMEVHYGKDVPVSENGAPASSGHLAIGQVVAVEAFATQRGLQAGRISI
LNVFEGPLTALPNASAPLRVMGQPVRLAAGARVAEGLRPGEPVRVSGLRDARGEVVATRI
ERAPGLREASAIGAVDRTGSLQGLKLGTRVAPAREVLVRGQWTGRQLEVAQTRPDPSLPF
AGRVQQAVVEGLVQRTQARQLVVAGLNVTLGQGTVIVGRQPAALALDQRVRVSGVLNGTH
ELRATRVEFQDDRVDNPDRSQSGHGGEHDGSSSGGSSSGHGASDGASDRDENSDDHSGRS
AVDGSSDHGSGEKSGKSVHLDALEQSTRSNSGSSDRVEKVEVENTGKVEKVDKVEKPEKV
EKVEKVEKVEKVEKVEKVEKVEKVEKVEKVEKVEKVEKVEKPERVEKVEKVEKVEKVERV
EKVELPEKVEKVERPEKAETVEKVEHPERSGR