Protein Info for PP_1190 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF07308: DUF1456" amino acids 3 to 70 (68 residues), 81.1 bits, see alignment E=2.7e-27 amino acids 86 to 153 (68 residues), 97.5 bits, see alignment E=2.1e-32

Best Hits

Swiss-Prot: 49% identical to YEHS_ECOLI: Uncharacterized protein YehS (yehS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to ppf:Pput_1221)

Predicted SEED Role

"FIG00956655: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NL7 at UniProt or InterPro

Protein Sequence (153 amino acids)

>PP_1190 conserved protein of unknown function (Pseudomonas putida KT2440)
MNHNDVLRSLRYMLKVNDAKMAEIIGLSGLEVHPLVLATYLKKEEEEGFVRCPERVMAHF
LDGLVIYRRGKDESRPQQPIELPVTNNLILKKLRVAFELKEDDLHAILKSVNFPVSKPEL
SALFRKAGHDNYRPCGDQLMRNFLKGLTLRVRG