Protein Info for PP_1150 in Pseudomonas putida KT2440

Annotation: putative Membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 18 to 20 (3 residues), see Phobius details amino acids 25 to 26 (2 residues), see Phobius details amino acids 29 to 31 (3 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 67 to 84 (18 residues), see Phobius details amino acids 89 to 106 (18 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details amino acids 374 to 390 (17 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details amino acids 427 to 445 (19 residues), see Phobius details amino acids 457 to 475 (19 residues), see Phobius details amino acids 482 to 500 (19 residues), see Phobius details PF04632: FUSC" amino acids 16 to 652 (637 residues), 651.8 bits, see alignment E=2.2e-199 PF06081: ArAE_1" amino acids 20 to 119 (100 residues), 26.9 bits, see alignment E=7.2e-10 PF13515: FUSC_2" amino acids 28 to 156 (129 residues), 46.8 bits, see alignment E=4.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1150)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NQ5 at UniProt or InterPro

Protein Sequence (662 amino acids)

>PP_1150 putative Membrane protein (Pseudomonas putida KT2440)
MPITFQALFAPSSLALKFAIKTLLGGGLALWLAMRWGLEQPSWALMTAFIVAQPLSGMVV
QKGLARLAGTLVGTVMSVLFIGLFAQTPGLFLLTLALWLALCTAASTQLRSAWAYAFVLA
GYTAAIIALPAIDHPLQVFDQAVARCTEICLGIFCATASSALLWPMRVEQQLGGQARQAW
QNGLQAASAMLGGEDEARKGLLESLGRIVAIDSQREHAWFEGNRGRQRARAIRGLSQKLM
VLLRISRSVRRQWRQLDEGEVEHLTPWLQEVRTLLAQPDQPSLLLLRQRIWDAAHDEQIS
SAEHFCLARMALLLDYAMAASQALEDVEAGRAPKDVSQGLAAHRDWSLALLFGSRSALAF
LVMSGFWLATAWPSAPGGLVLTCVVCSLFASRENGAQIGLSFLRGIFLAIPAAFVVGQIM
LPQWSSFAMLCLGMGVPLFLGALGMAHPRTGATATSYCLHFIVLVSPLNAMQFGVATMLN
SALAMLVGVSAAVMAFRLLVFRHPAWLGRRLRAATQNDLVRLTRRDLRGADSWFGGRMAD
RLMQLARHASELPEGERKRWDDGLHGLDIGDELVHLRMCLAVAQAPLGRAEREYLQHVEA
ALAKGPAAGRGQLLDAASEQFIAALRRLPASDPLRLAEGAVLQLQKSWGKWCRWQEDTHG
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