Protein Info for PP_1136 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 TIGR02608: delta-60 repeat domain" amino acids 84 to 127 (44 residues), 17.1 bits, see alignment 1.9e-07 amino acids 176 to 201 (26 residues), 17.6 bits, see alignment (E = 1.3e-07) amino acids 216 to 260 (45 residues), 24.6 bits, see alignment 8.6e-10 amino acids 342 to 386 (45 residues), 28.7 bits, see alignment 4.6e-11 PF17164: DUF5122" amino acids 88 to 118 (31 residues), 17.8 bits, see alignment (E = 1.7e-07) amino acids 345 to 381 (37 residues), 22.7 bits, see alignment 4.8e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1136)

Predicted SEED Role

"fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NR9 at UniProt or InterPro

Protein Sequence (433 amino acids)

>PP_1136 conserved protein of unknown function (Pseudomonas putida KT2440)
MGQNKQVAGFDIEYRVPFPIPEATNKSTLVLPVGGKRYLLDGLGKTIMVGRVKHDGTADL
TFGLRGFSSHNISDFTDAFPRAAGLIPQPDGGVIAGLYNASELGLVRFKLNGEVDMSFGQ
AGTVFHKVEKMSASSAGRGRNNDGRQDSVFSSAVLGALTPAKDGNFYGVLGNRFAGDFSL
LRCLANGALDAEFNGTGIVSVKHPTLDTDAPAVIASADGGAVVVGTLGDLSVGMRGFFCR
YKADGSLDKTFGEEGYSIFDSVSAGIPHPELSQMELAHVAIMADGGYVACGYLTARDPWR
FYGMVVRIDSTGRPEQSFNGGKPLLFELPDGVEVDFLWGGIAEMADGKVAVAGGAVTRNA
GYQRQVLLVRYDSKGVLDPTFGEQGWRILAPFGDAVTYLQGLQVDLEQKILVSGDSGPNN
NLSSMKGFAAQLD