Protein Info for PP_1058 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details PF00912: Transgly" amino acids 156 to 352 (197 residues), 62.3 bits, see alignment E=2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1058)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NZ5 at UniProt or InterPro

Protein Sequence (1049 amino acids)

>PP_1058 conserved protein of unknown function (Pseudomonas putida KT2440)
MGALWQSEPSRTEAPEIPPAETPQPKSPRQRRLWWRLIILILLVALVAIGVAAYDEFRTS
ELQSREFSKLASTLTYSLQPGPSDAIIYPGDGPFDKRLGYSALGEFLPRLLKRDYLISEQ
VKFSPALMNYVDHGLFAPYIEKIQAGLSITDCRGDTLYQYNYPQHLYPDFAAIPPVMVNS
LLFIENRDLLDTQDPRNNPAVDWPRFAKAAYSQVAKYLALPGQSAGGSTLATQLEKYRHS
PDGLTVSGAEKIRQMISASVRAYQGGPDTTEARQRIVRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGADFDQVNQALNATATDPQSMAARGLALRQVLSLMIAQRRPSHYLSKGRVELAE
LTDSHIRLLAANKVIDQPLADAALASKAVYRDWVAQPTIVPIITNKGISLARNRLSAMLN
RPLYDLDRLDLSATSTLQADLQLQVSQYLKNLADPEFAAQIGLIGERLLTAKTTDQVSYS
FTLFERTADGSRVRVQTDSTNQPFDINEGSKLELGSTAKLRVLTTYLEIIAELHDKYAGK
PAAELKKVEVAELDRITQWSLEWLALNSKNQSLDAMLDAALERKYSANTGEAFFTGGGMH
VFNNFRKEDNNRNPTLKDALRESINLPFIRLMRDLVRYVTYQQPYNRVPLLKDDADPRRQ
EYLARFADKEGTNYLMRFWKKYQRKTSQQRLDTFLDSMRVTPQRLAAVHRYLFPEASQET
FNAFVRAHLKGDKVVLGKLTDGRLSEMYVAYGPGKYDLPDQGYIAKVHPLDLWLLGYLLK
NPSSTLTEMINASRFERQEVYGWLFKSRHQGARDSRIRTMVEIEAFLDIHQRWKRVGYPF
DHLVPSLATAIGSSGDRPAALSELVGIIQNDGVRLPTLRIDTLHFAANTPYETKLITDPD
RGVRILPVEVARALKGAMSQVVDAGTARRISGSFKLQDGTPLVMGGKTGTGDNRIESFGA
GGRLIGSRSLNRTATFVFFLGDNHFGTLTAFVPGRTAEAFKFTSALPVQVLKGMAPILMP
YLQPGNPNECKPPQVALHTPSPAGNTSTQ