Protein Info for PP_0958 in Pseudomonas putida KT2440
Annotation: phospholipid ABC transporter ATP-binding subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 58% identical to MLAF_ECOL6: Intermembrane phospholipid transport system ATP-binding protein MlaF (mlaF) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 99% identity to ppf:Pput_0997)Predicted SEED Role
"Uncharacterized ABC transporter, ATP-binding protein YrbF"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q88P94 at UniProt or InterPro
Protein Sequence (269 amino acids)
>PP_0958 phospholipid ABC transporter ATP-binding subunit (Pseudomonas putida KT2440) MSVDSAYAVELKGVTFKRGSRSIFSNVDISIPRGKVTGIMGPSGCGKTTLLRLMGAQLRP SSGEVWVAGQNLPTLSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTQLSDEM IRDIVLMKLQAVGLRGAIDLMPDELSGGMKRRVALARAIALDPQILMYDEPFVGQDPIAM GVLVRLIRLLNDALGITSIVVSHDLAETASIADYIYVVGDGQVLGQGTPDELMGSDNPRI RQFMKGDPDGPVPFHFPAPDYRADLLGAR