Protein Info for PP_0806 in Pseudomonas putida KT2440

Annotation: putative Surface adhesion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 6310 PF22783: BapA_N" amino acids 1 to 124 (124 residues), 122.2 bits, see alignment (E = 5.2e-39) PF17936: Big_6" amino acids 157 to 239 (83 residues), 92.6 bits, see alignment (E = 7.5e-30) amino acids 242 to 324 (83 residues), 92.1 bits, see alignment (E = 1e-29) amino acids 332 to 413 (82 residues), 88.1 bits, see alignment (E = 1.9e-28) amino acids 417 to 496 (80 residues), 82.5 bits, see alignment (E = 1.1e-26) amino acids 501 to 583 (83 residues), 88.6 bits, see alignment (E = 1.3e-28) amino acids 586 to 668 (83 residues), 90.1 bits, see alignment (E = 4.3e-29) amino acids 677 to 758 (82 residues), 87.5 bits, see alignment (E = 2.9e-28) amino acids 762 to 842 (81 residues), 85.9 bits, see alignment (E = 9.1e-28) amino acids 846 to 925 (80 residues), 79.1 bits, see alignment (E = 1.2e-25) amino acids 930 to 1012 (83 residues), 88.6 bits, see alignment (E = 1.3e-28) amino acids 1015 to 1097 (83 residues), 89 bits, see alignment (E = 9.8e-29) amino acids 1106 to 1187 (82 residues), 87.3 bits, see alignment (E = 3.3e-28) amino acids 1191 to 1271 (81 residues), 87.5 bits, see alignment (E = 2.9e-28) amino acids 1275 to 1355 (81 residues), 81.8 bits, see alignment (E = 1.8e-26) amino acids 1359 to 1441 (83 residues), 81 bits, see alignment (E = 3e-26) amino acids 1444 to 1527 (84 residues), 90.5 bits, see alignment (E = 3.3e-29) amino acids 1536 to 1617 (82 residues), 86.2 bits, see alignment (E = 7.2e-28) amino acids 1621 to 1701 (81 residues), 83.6 bits, see alignment (E = 4.8e-27) amino acids 1705 to 1785 (81 residues), 81.8 bits, see alignment (E = 1.7e-26) amino acids 1789 to 1871 (83 residues), 81.9 bits, see alignment (E = 1.6e-26) amino acids 1874 to 1957 (84 residues), 90.5 bits, see alignment (E = 3.3e-29) amino acids 1966 to 2047 (82 residues), 86.3 bits, see alignment (E = 6.9e-28) amino acids 2050 to 2131 (82 residues), 85.5 bits, see alignment (E = 1.2e-27) amino acids 2135 to 2212 (78 residues), 84.6 bits, see alignment (E = 2.3e-27) amino acids 2220 to 2301 (82 residues), 72.9 bits, see alignment (E = 1e-23) amino acids 2305 to 2387 (83 residues), 85.3 bits, see alignment (E = 1.4e-27) amino acids 2396 to 2477 (82 residues), 81.5 bits, see alignment (E = 2.2e-26) amino acids 2480 to 2561 (82 residues), 84.4 bits, see alignment (E = 2.8e-27) amino acids 2565 to 2644 (80 residues), 75.8 bits, see alignment (E = 1.3e-24) amino acids 2650 to 2731 (82 residues), 72.8 bits, see alignment (E = 1.1e-23) amino acids 2734 to 2816 (83 residues), 80.4 bits, see alignment (E = 4.9e-26) amino acids 2827 to 2908 (82 residues), 84.6 bits, see alignment (E = 2.4e-27) amino acids 2911 to 2992 (82 residues), 83.4 bits, see alignment (E = 5.6e-27) amino acids 2995 to 3077 (83 residues), 75.6 bits, see alignment (E = 1.5e-24) amino acids 3081 to 3162 (82 residues), 79.9 bits, see alignment (E = 6.9e-26) amino acids 3166 to 3246 (81 residues), 70.8 bits, see alignment (E = 4.5e-23) amino acids 3250 to 3331 (82 residues), 77.1 bits, see alignment (E = 5.2e-25) amino acids 3335 to 3416 (82 residues), 78.7 bits, see alignment (E = 1.6e-25) amino acids 3419 to 3501 (83 residues), 86.3 bits, see alignment (E = 7e-28) amino acids 3504 to 3586 (83 residues), 77.9 bits, see alignment (E = 2.8e-25) amino acids 3589 to 3671 (83 residues), 81.4 bits, see alignment (E = 2.3e-26) amino acids 3675 to 3755 (81 residues), 69.6 bits, see alignment (E = 1.1e-22) amino acids 3759 to 3838 (80 residues), 67.7 bits, see alignment (E = 4.2e-22) amino acids 3846 to 3925 (80 residues), 46.4 bits, see alignment (E = 1.9e-15) amino acids 3928 to 4010 (83 residues), 91.1 bits, see alignment (E = 2.2e-29) amino acids 4013 to 4095 (83 residues), 79.4 bits, see alignment (E = 9.4e-26) amino acids 4099 to 4180 (82 residues), 84.9 bits, see alignment (E = 1.9e-27) amino acids 4184 to 4265 (82 residues), 85.2 bits, see alignment (E = 1.5e-27) amino acids 4269 to 4350 (82 residues), 90.6 bits, see alignment (E = 3e-29) amino acids 4354 to 4434 (81 residues), 84.1 bits, see alignment (E = 3.3e-27) amino acids 4438 to 4520 (83 residues), 80.7 bits, see alignment (E = 3.9e-26) amino acids 4523 to 4605 (83 residues), 85.6 bits, see alignment (E = 1.1e-27) amino acids 4608 to 4690 (83 residues), 82 bits, see alignment (E = 1.5e-26) amino acids 4694 to 4775 (82 residues), 83.8 bits, see alignment (E = 4.1e-27) amino acids 4779 to 4860 (82 residues), 83.8 bits, see alignment (E = 4.2e-27) amino acids 4864 to 4944 (81 residues), 66.7 bits, see alignment (E = 8.9e-22) amino acids 4947 to 5028 (82 residues), 72.6 bits, see alignment (E = 1.3e-23) amino acids 5032 to 5113 (82 residues), 79.1 bits, see alignment (E = 1.2e-25) amino acids 5117 to 5192 (76 residues), 50.2 bits, see alignment (E = 1.3e-16) amino acids 5200 to 5281 (82 residues), 61.7 bits, see alignment (E = 3.2e-20) amino acids 5285 to 5366 (82 residues), 74.7 bits, see alignment (E = 2.8e-24) amino acids 5370 to 5450 (81 residues), 83.1 bits, see alignment (E = 6.7e-27) amino acids 5454 to 5534 (81 residues), 75.9 bits, see alignment (E = 1.2e-24) amino acids 5538 to 5619 (82 residues), 82.5 bits, see alignment (E = 1e-26) PF17963: Big_9" amino acids 6031 to 6126 (96 residues), 25.5 bits, see alignment (E = 1e-08)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PP2 at UniProt or InterPro

Protein Sequence (6310 amino acids)

>PP_0806 putative Surface adhesion protein (Pseudomonas putida KT2440)
MDNIVVADKQSEVATQSAWGNINLNAPSVVQVPVSPDKVATVTQRGQDLIVTLKSGEKIT
IGNFFAVDQAGVGSDMVFVGEDGTLWHAQYDAAAFTGFTFEEVASLDELVAGIGTAGSAM
PTWAIAGLSLLGVGGAAAAADNGGGGSSGGSDPDTSAPATPIDLLVSPDGLRLTGRGEAG
TTVNIRDAAGNLIGSGTVGADGNFNVTLNAPQINSENLDVTLTDAAGNVSAPGAVTAPDA
TAPLAPTDLAINEQGNTLTGRAEPGSTVSVRGAGGVLLGTAVAGADGQFSITLQPPQSDG
QALEISAADAAGNISPVASITAPDVDNPDTTAPEQPTDLALADGVTFTGRGEPGATVQVR
DAAGNLIGTGVVGADGLFSLTLSPAQTNGEALDVRLVDAAGNSSAPLQFDAPDITPPDAV
TNITVGADGLALSGRGEPGATVEVRDANGTVIGTGVVGANGTFLIDLAPAAQPGEQLSLV
QTDPSGNASVATEYDVPLTTAPDSPSNLAIDADGTTLTGTAPAGSRVEVHDANGTLIGSA
IANADGSFSIELNPAQANGELLDVVAIDDGGVSSLPAQITAPDITAPAAPTELAVSADGS
VITGRAEPGSTVRIVAADGTELGTAVVGPTGVFSLNLNPPQVDGEVLQATATDAAGNTSP
SSAVTAPDIDGVDTTPPAAPTDLVIGLAGSQLSGRGEAGSTVQVRDAAGNILATGTVAAD
GTFTVTLAPAVNDGSTLQVTLTDAAGNVSQPGSVTSADLLPPAQPTDLALTDGITFTGRG
EPGATVQVRDAGGAVIGTGVVGADGLFSLTLSPAQTNGEALDVRLVDAAGNSSIPLEFTA
PDITPPDAVTDILVGPGGTALSGRGEPGATVEVRDANGTVIGTGVVGANGTFLIDLAPAA
QPGEQLSLVQTDPSGNASVATEYDVPLTTAPDSPSNLAIDADGTTLTGTAPAGSRVEVHD
ANGTLIGSAIANADGSFSIELNPAQANGELLDVVAIDDGGVSSLPAQITAPDITAPAAPT
ELAVSADGSVITGRAEPGSTVRIVAADGTELGTAVVGPTGVFSLNLNPPQVDGEVLQATA
TDAAGNTSVTSSVTAPDIDGGDTTPPEAPTNLVIGLAGSQLSGRGEAGTTVQVRDAAGNI
LATGTVAADGTFTVTLNPAVNDGSTLQVTLTDAAGNVSQPGSVTSADLLPPAQPTDLALA
DGVTFTGRGEPGATVQVRDAAGNLIGTGVVGADGLFSLTLSPAQANGEALDVRLVDAAGN
SSIPLEFTAPDITPPEAVTDILVGPGGTALSGRGEPGATVDVRDANGTVIGTGVVGANGT
FLIDLAPAAQPGEQLSLVQTDASGNASSALQFEVPLTTAPASPSDLVFAEDGSSISGTAP
AGTRVEVHDANGTLVGTVVAGPDGSFTVTLDPPQANGELLDVVAIDDGGVSSLPTQITAP
DITAPAAPTELVINADGSVVTGRAEPGSTVRVLAADGTTVLGSVVVGATGSFSITLDPPQ
IDGEVLQVTATDAAGNASTASNLTAPDIDGGDTTPPEAPTNLVIGLAGSQLSGRGEVGST
VQVRDAAGNILATGTVAADGTFVIALDPAVNDGSTLQVTLTDAAGNVSQPGSVTSADLLP
PAQPTDLALADGVTFTGRGEPGATVQVRDAGGAVIGTGVVGADGLFSLTLSPAQANGEAL
DVRLVDADGNASAPLQFDAPDITPPGAVSNIAVGADGLALSGRGEPGATVEVRDASGTVI
GTGVVGANGTFLIDLAPAAQPGEQLTLVQTDPSGNASSALQFEVPVTTAPASPSDLVFAE
DGSSISGTAPAGTRVEVHDANGTLIGTVVAGPDGSFTVTLDPAQTNGELLDVVAIDDGGV
SSLPTQITAPDITAPAAPTELVINADGSVVTGRAEPGSTVRVLAADGTTVLGSVIVGATG
SFSITLDPPQIDGEVLQVTATDAAGNASTASNLTAPDIDGGDTTPPEAPTNLVINPAGSQ
LTGRGEAGTSVQVRDGAGTVVATGTVNPDGTFAITLNPAITDGSTLQVTLTDAAGNVSQP
GSVATPDLLAPTQPTELALIDGVTFTGRGEPGATVQVRDATGSLIGTGLVNEDGTFSVTL
FPAQANGEALDIRVVDAAGNSSTPLAFTAPDVTPPAAVSNVVVGADGLVLSGRGEAGATV
QVRDANGSVIGTATVGANGTFLVDLTPAAQPGEQLSLVQTDASGNASEALQYEIPATTTP
ASPSDLVVAANGASITGTAPTGSRVEVHDANGTLVGSVVVGAGGTFTVILNPAQANGELL
DVVAIDGTGASSLPVQIAAPDITPPVTPSELAISANGSEVTGRAEVGSTVRVLAADGTTV
LGSVVVDATGSFSITLDPPQVSGEVLQVTATDAAGNTSTAGDITAPDIDGGDTTPPDAAT
NLVVGLAGAQLNGRGEAGASVQVRDAQGNVLANGSVNPDGTFQITLDPPVKDGSNLQVVL
TDASGNASAPASVVTPDLQAPAQPTGVALADGVTLSGNGEPGATVQVRDALGNLLGTGLV
TETGSFSITLSPAQANGEILDIRLIDAAGNISSPLQFEAPDITVPAVVSSIVVGADGLTL
GGRGEAGATVEVRDANGTLVGTGTVTANGTFLIDLDPAALPGERLSLVQTDPSGNASEAL
TYDVPLVVTPTSPSELVVAADGSSISGSAPAGSRVEVHDANGTLVGSIVVGAEGTFTVVL
IPAQANGELLDVVAIDNNGTSSLPVQVAAPDITAPVAPSDLAISGDGTVVSGRAEAGSTV
RVLAADGTTVLGSVVVGASGAFSIGLTPPQVAGEQLQVTATDVAGNASTAGSVTAPIVDN
GGDTTPPEPATELAISNDGRTVSGRGEAGATVEVRNDQGQVLVSGTVQPDGSFNVQLPTP
VVDGSSLQVTLTDAAGNVSTPSPLTAPDQVAPLQPTDLVLSNGDSLAGTAEGGARVEVKD
ASGNLIGSAIAEPDGSFSLTLDPPQANGETLSITVTDAAGNTSVPLSYVAPDITAPAIVA
DVVASDGSLAVSGRGEPGATVEVRDAQGAVIGTGTVAPNGTFVIDLEAPLAAGENLVLVQ
TDAAGNTSAGVSVTVADTPLPESPSGVVVAGDGSSVSGTAPADTQVEVRDAQGNVLGSAQ
AGPDGSFTVGLTPAQANGETLDVVAVDGAGNSSLPTQITAPDITPPNEASELQLSADGSL
LTGRGEPGTTVQVISADGTVLGNAQVGADGVISVVLNPAQTDGQELDVVLRDPAGNTSTA
NIVAPDTDGPLQPSGLAIDTAGIHLTGQGQSGSIVTVRDADGNVLGTATVGGDGRFDVTL
NAPQRNGESLTVEATDNLGNSAGPVDFTAPDSTPPQVVTNPAIDGIGTTITGNGEPGATV
TVRGPDGSVLGSTVVGAGGAFEITLDEPQTNGQALTVEQRDAAGNLSAAVDLSAPDTQAP
DSPTGLVLAGDGSSLSGSGEPGAQVTVTGTGGAVLGTATVQPDGTFQVAIDPPQLNGQTL
SVTQADNSGNGSPAGTVIAPDFEAPLPAQGLGLDPTGTLLSGQGEAGSTVEVRNAAGNLL
GTIPVNADGTFEVALSPAQTNGEVLSVVLIDGGGNASPSATFTADDSTAPAAPAGLTITP
GGSAIQGSGEAGSTVEVKLADGTLVGTVVVPAGGSFTVPLSPAQLDGQALNVTLTDAAGN
ISQPSQIFAPDITPPALPTDVAVSSDGTAVTGNAPGASSVTVSDGAGNVITVAVNPDGSF
SVPLDTPQNNGQTVTVVVTDAAGNDSAPVSVTAPDTTNPEPATGLTVSPDGSTVGGTAEP
GSTVEVRNPDDTVRGTVTAGPDGTFVIPVAPPLASGETVDVVVIDPAGNESPEIPLTGPT
GTEVATPSALAISVDGFLLTGQGTVGSLITVTSGGTTLGSATVGSDGTFRVFFQNAQLNA
QILQVSAKATVDGQPSVPAIIVANDTTAPDAPTQVNLNATGSTLTGQGEVGATVRVTDLQ
GTLLGTATVDSNGLFSVSFSPAVANGQNLIVTQADAAGNVSLAATLQAPDLQAPLAASNL
SLNSAATVLSGQGEAGASVTVRDASGAILATGTVNQSGQFQITLPSAQVTGSPLQVTLSD
AAGNVSGPASLATPDHTPPAAISNPVLSQDGRQLSGSGEAGATVQVRNAAGALLGTATVG
TDGRFTVTFDTPQANGQVIGVTQMDAASNTSPAINVTTPDLTPPAPLTNVVLNNNGLTLT
GLGEAGATVTVHGPDGTIIGTGLVAANGSFTLTLNSAQLNAQLLSVTQTDAGNNTSTAVA
VTAPDFTPPTAPTALALSGTGLQLTGNAEAGSTVTVRDASGNVLGTAVAGGNGTFQVTLN
SAQTNGQILQVTATDAAGNVSPAAPYTAADTTPPAAVANLAVSANGATLTGDGEAGATVT
VRAPDGTVLGNATVAADGHFSVSLSPAAITGESLSVVQADAAQNVSPAQNVTAPGALAPA
TPDNLILAADGLSVSGTAEAGSTIKVYGPNGVLLGSSPVTNDGTFTVNLGSAQANGEVLQ
VSATGPDGTVSLPATLQAPDTTAPQPLTNLVLSNDGLVLSGRGEAGATVTVLGEGGIELG
TAVVDANGDFNVDLSVAQINGEQLSASQSDVAGNESNSVSLTAPDRVAPDAAGNLAFAGG
GSLLNGTGEAGAAVRVLAADGSVLGSATVRADGTFQVNLVSPQANGQQVQVVLADAAGNQ
SAASAITAPDTTPPSAPGELAVSGDGVTLTGRGEVGARVTVTNPAGEEIGSATVDASGHF
TITLSPALGNAELLSFTQADAAGNVSAVATLQTPDFTPPDPLTQVVINADGSVVSGLGEA
GATVIVSNAAGTVLGTGIVLADGSFSVELSPAQINNQTLSVLQADPPGNVSLPVNVQAPD
LTPPAAATELRLNAAGDELGGVGEVGATVRVYVGTTQIGTGTVGANGTFIVELDAAQLDG
QVLQVTLTDATGNISPISSVTAVDTTPPATVVATINDSGTQVIGTAEAGTRVTVVNNNGD
LLGQVTVEPDGTFVLDLNLPQINGETLTIIAQDATGNPSVPLAVTAPDLTPPVQPTDLLL
NAAGTSMTGTAEAGSTITVRGPDNNIVGTVEVGENGQFTVPISPAQNNGQLLTVVSTDDA
GNASVAVPYQTNDTSPPDLVTNLAINNTFNVLTGKGEANATVTVSFDGDVIGTGVVDGAG
NFQITLVPAVGSLATLEVTQSDGINTSAVATYLTPLIAPPVPPTDVTLGSDGLTLTGSAP
SGVGIRVYDAAGNLIGTGVASLNGSFTLTLDAAQLNGEHISVTAVALIGGESQPTFLQAA
DITPPTNPVVTSLSVNGLVLTGTGEAGATVTVRDAGNNVLGTAVVNGGGVFTVNLNAAQL
NGQVLGVSQADTAGNVSGSTSYTAADLQPPAAPTNVAINGTGTVLTGSGEAGATITVQGP
NGQVGTGVVQANGTFSITLTSPQNDGQLLVVRQADAAGNLSASTSLTAPDTTPPAAPLAT
INANGTSVSGSGQVGSTVTVRNSAGTVLGTATVGSNGLFVVSLTAAQIDNQALSVTLTDS
AGNVSTGTALTAPDLTPPAAAGNLLFSADGGTLTGTGEVGATVTVRSAGGTVLQTATVQA
DGTFTVTLSPPQDNGQILSVTLSDPRGNVSGNVNVTAPDVDANAPVIASDNLATATVNLA
AVSATKTYTDSFTTLLSGFSKTYTWTVAAGTTADPTLTLTTNSVLALLNNTSFTLQVKDA
SGAWVTIATGNTQGLLDLIVLPIGLQVDIGVLQAGDYRLTVGSGGIGLITEVSTTLDIVS
TSLTQFTGTGIATSGNVITDVGTDGAVDARGPDSAAVLQVLKDGSYVSAGTATTVQGQYG
TLVIRADGSYTYTPNGSPNSVGKVDVFSYQLVHPNGLSDAANLYVRIDSPQATEVWSDTN
YGAPATVVDAVNDVGTSQVTLDNRVDSSSSTLGSLNLPVIGTRQATYTTTVAANTTADLQ
VVVNSTNLLSLLNGTTIELLKLNPATGQYVLVQSVPGGSLVSILGGGAGYTFENQGAGTY
HVRVTAGGIGLLSSITTSLNTTTTYLTEFVVSGATAATGNLLADDNVGSALTVLSVLTAA
NTYTIPGYNGVSVAGTYGTLLVHADGSYTYTLNAGLTSAVVGQHDTFTYELSHPNGTTDT
ATLTINVDSAAGLTATTSLLADTGDESAALASLAAATDVIAGTDGNDHLDGSQGGHITLQ
GGAGDDTLVVVDQNFASVDGGSGTDTLLWGGGDASIDLGNLAGRVHDIEILDLNDTSSVA
LTLNLADVVAITETATDTLIIKGDDKDSVHMTDNWTLVGNQTADGIDYNQYTAQEDPSHH
LWVQNGIHVV