Protein Info for PP_0765 in Pseudomonas putida KT2440

Updated annotation (from data): putative adhesin (DUF1302)
Rationale: Similar to PA3923, which binds laminin (PMC6890786) and is involved in biofilm formation (PMC8547006), so this is probably an adhesin.
Original annotation: conserved exported protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF06980: DUF1302" amino acids 15 to 628 (614 residues), 613.3 bits, see alignment E=2.7e-188

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0765)

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PT3 at UniProt or InterPro

Protein Sequence (628 amino acids)

>PP_0765 putative adhesin (DUF1302) (Pseudomonas putida KT2440)
MKSANLFWRRAKLPLAVSLASTLASPAFAVSFNIGEIEGQFDSSLSIGASWSTANPNKNL
IGVNNGGKGLSQTSDDGHLNFKKGETFSKIFKGIHDLELKYGDTGVFVRGKYWYDFELKD
ENREFKDISDSNRKEGAKSSGAELLDAFVYHNYSIGDQPGSVRFGKQVVSWGESTFIGGG
INSINPIDVSAFRRPGAEIKEGLIPVNMFYISQSLTDNLSAEAFYQLEWDQTVVDNCGTF
FSQPDIIADGCTDNLRVLNSSRTVPGAAQQFLATRGVNINEEGVMVRRGADRDARDSGQF
GVAMRYMFEPLDTEFGAYFMNYHSRAPIFSATGAPPSVFAGLSALPAQLRALAPLIVAGN
SEYFVEYPEDIRLYGLSFSTTLPTGTAWSGEVSYRPNAPVQLNTTDILFAGVRPIGGALS
NASLLTGTPGQDLHGYRRKEITQFQTTLTHFFDQVMGASRMTVVGEVGVTHVGGLENAHD
TRYGRDPVFGPGPLPSTGGADTCQALNGSTIAGAGAGASTANLNRKCENDGYTTSTSWGY
RGRVIWDYNDVFAGINLKPSVAWSHDVSGYSPGPGANFEEGRKAVSLGLDAEYQNTYTAS
LSYTNFFDGKYSTVDDRDFVALSFGVNF