Protein Info for PP_0707 in Pseudomonas putida KT2440

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 216 to 236 (21 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 360 to 389 (30 residues), see Phobius details amino acids 405 to 433 (29 residues), see Phobius details amino acids 438 to 458 (21 residues), see Phobius details amino acids 489 to 510 (22 residues), see Phobius details amino acids 543 to 560 (18 residues), see Phobius details amino acids 580 to 602 (23 residues), see Phobius details amino acids 609 to 631 (23 residues), see Phobius details PF12607: DUF3772" amino acids 140 to 198 (59 residues), 76.6 bits, see alignment 1.5e-25 PF00924: MS_channel_2nd" amino acids 627 to 692 (66 residues), 76.7 bits, see alignment E=1.8e-25 PF21082: MS_channel_3rd" amino acids 701 to 782 (82 residues), 21.3 bits, see alignment E=4.4e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0707)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PZ1 at UniProt or InterPro

Protein Sequence (803 amino acids)

>PP_0707 putative membrane protein (Pseudomonas putida KT2440)
MRRVSLARYCPGLIALLALMLLLVSPAWSAPATPLSNLAAAEAPALDENASLEQLSDRLD
LIRQGVTSEANDDVLSQLRLGAMQVQRQADALSALRTADVGKLDDQLKVIGPAQPDEAAT
LTQQRKALEAEKKALVAQQDQATKLTQSARDLSTQIVNLRRSQFNSQITSRAASPLSPAF
WQSIIRPTQDDVARLRDLRGEAADAISSAFSAENRWLFVASLVAAILVWTLVRRVLERLL
ASAMIRWLPEGRLRRSALALGVSLATLGTIAGSVSLLRWGLESNARLGSDITSLTNHILT
LVVFSAFITGLGRAMLMLQRPSWRLPAIHDEVASALGWFPKVLALALMVMMTMERMNSVI
GASLALTVAVNGLTALVVALTFAGALLCYRRTLRKHDLERPTGLAGLIPFVMVIWLTLIL
LALLTGYLTLAYFLTAKLLWVSLVITCAYLLTTFFGDLCETLLSPRQPGGLALASTLGLA
PRHQAQASTILAGIGRTVVLFLALLLVLMPSGTSPSELLLSLGDWDGTGGKVLGNLNIVP
QDILLALAIFLGGLFAIRVVKRWLSDRLLPETEMDAGMRASLVTLVGYLGFLFLAMLVMS
TLRINLTSLTWVVSALSVGIGFGLQQIVQNFISGLILLTERPVKVGDWVSLAGVEGDIRR
INVRATEIQMSDRSTVIVPNSQFISQNVRNVTMGNALGVVSITLTLPLETDANRVRELLL
AAYHEHEAILDAPAASVSFKDLTASGMVIGVSGYVAGPRQVSGARSDLLFTILGRLRDEG
IPLSSPQSMVLVQEGARPADESM