Protein Info for PP_0706 in Pseudomonas putida KT2440

Annotation: fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 PF02805: Ada_Zn_binding" amino acids 9 to 70 (62 residues), 102 bits, see alignment E=2.7e-33 PF00165: HTH_AraC" amino acids 98 to 128 (31 residues), 31 bits, see alignment (E = 4.3e-11) PF12833: HTH_18" amino acids 102 to 180 (79 residues), 67.4 bits, see alignment E=2.3e-22 TIGR00589: methylated-DNA--[protein]-cysteine S-methyltransferase" amino acids 267 to 346 (80 residues), 113.1 bits, see alignment E=2.4e-37 PF01035: DNA_binding_1" amino acids 268 to 347 (80 residues), 113.4 bits, see alignment E=6.9e-37

Best Hits

Swiss-Prot: 56% identical to ADA_ECOLI: Bifunctional transcriptional activator/DNA repair enzyme Ada (ada) from Escherichia coli (strain K12)

KEGG orthology group: K10778, AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC: 2.1.1.63] (inferred from 100% identity to ppu:PP_0706)

MetaCyc: 56% identical to DNA-binding transcriptional dual regulator / DNA repair protein Ada (Escherichia coli K-12 substr. MG1655)
2.1.1.M37 [EC: 2.1.1.M37]; Methylated-DNA--[protein]-cysteine S-methyltransferase. [EC: 2.1.1.M37, 2.1.1.63]; 2.1.1.63 [EC: 2.1.1.M37, 2.1.1.63]

Predicted SEED Role

"ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)" in subsystem DNA repair, bacterial (EC 2.1.1.63)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.63

Use Curated BLAST to search for 2.1.1.63 or 2.1.1.M37

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PZ2 at UniProt or InterPro

Protein Sequence (350 amino acids)

>PP_0706 fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator (Pseudomonas putida KT2440)
MNLYTTPDQRWQAVESRDTAATGHFVYAVRTTGVYCHPGCKSRQAKRMNVEFYDTAAAAE
AAGYRACKRCISKASATRHSQLVTHACRLIETSDPVPSLGQLSARLAVSPFHLHRLFKAE
TGVTPKAYATAFRARRLRAHLEDDQRSVTDAIYNAGYNSNSRFYESADQRLGMRPRQYRA
GGAGATIHFALGQCSLGAILVAQSDKGICAILLGDDPEGLLHELQDQFPKAHLIGGDSAY
EQKVAEVIGFVEAPSLGLALPLDVQGTAFQERVWQALREVPAGSRVSYTDIAERIGAPKA
VRAVAMACAANRIAVAIPCHRVVRRDGDISGYRWGVERKQQLLKRETALS