Protein Info for PP_0693 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 PF28007: MksF" amino acids 1 to 926 (926 residues), 2019.5 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0693)

Predicted SEED Role

"Chromosome segregation ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88Q05 at UniProt or InterPro

Protein Sequence (943 amino acids)

>PP_0693 conserved protein of unknown function (Pseudomonas putida KT2440)
MSQERYGIRRFALLNTAGYSLGLFPLEHPLSVYGANNLGKSASINALQFPILARMSDMSF
GKYSLEQSRRFYFASDTSYILCELSLPHGPHVIGVVGRGPGGGFGHQFFAYKGELDLAHY
QKNDTCLRQKELFTNLERLGIKAYELKPDELRRLLVGGHTSVPLDLTMIPLRSTSEQSLK
TFRALFINLLHMREITAAKLKQLFLDAFEHSLRSGSVDYIAACEEAFRDVRRMEQDYNAL
VAAGPLVEALAGGVAQRDILRGKLHRISPVLDTLLGTWQEYAMARKEELVIQSEHYRGEQ
DRLQNDQRGGTQELMRLEREITGIQRWLGELSVLKHRFALVDDVKVLEQQLLAAKDAHDE
LAGALAQSRQFSAEDLDERVRDLEKRLKQVKQQLDHADNNSYARLREEFSQQDVDRLMRL
FNGALFSLPLGDRGIELDDSDLWVKSLEAVLDGFKGERFEAPGLAIDLTHIDPPALQALA
DRAALRDQKERLEKELKQLKTQQAVAADRSASKAQTETLYQEVLDAQKALEDFRRSQTLA
AEEPEKLEQLSQLEAAQDELKRSSDAFTERVQQLSAKLQLVGRQLGDLESKQRTLEDALR
RRQLLPADLPYGTPYMEAIDDSMDNLLPLLNDYQDSWQSLQRVDNQIEALYAQVRLKGVA
KFDSEDDMERRLQLLVNAYAHRTDEALTLAKARRAAVTDIARTLRNIRSDYDSLEHQLAL
FNREINKRQVSNLESFRVVLAPNKEALKHIDQIIHSAGQYEEGETLSVFDLTQSADQDNK
NEEAKEYLARLVAANHNQLGLKDLFELAFEITKVNGQPIIHADIDGAASNGTTMTIKALT
NMYLLLHLMDRDLAGRIRLPYYLDEAADIDERNQAALLETSQQLGFVPILASVKPQVSAH
VAIDLEGGSGPNGIYIDEADWKFISRLDEVKAVVREDQAEELA