Protein Info for PP_0636 in Pseudomonas putida KT2440

Annotation: Cold shock DNA-binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 219 to 241 (23 residues), see Phobius details PF00313: CSD" amino acids 13 to 71 (59 residues), 45.2 bits, see alignment E=3.5e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0636)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88Q61 at UniProt or InterPro

Protein Sequence (246 amino acids)

>PP_0636 Cold shock DNA-binding domain protein (Pseudomonas putida KT2440)
MSEKPDQEDTLTSGVVRSFMPEKGFGFIQGDDGRSYFVHIKNVEGGELFDGQSVAFEGQP
GPKGYRAVKVKPGERPPPPGYAYESPNHFIWTRDSKARGFDTIFTFGSGWAESNNPNEAR
ALLERASMERGGNAVLNVHLEKYSRSDGCSNYHYTVHRFTGDYANVQKIVTTTDQNWIAN
CAQWERDVLARIENENAQPAGWDTGVTSLVPPGAFKHGAILLLSWTATFMKILGFAIVAL
AKQMRR