Protein Info for PP_0599 in Pseudomonas putida KT2440

Annotation: paraquat-inducible protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 766 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF02470: MlaD" amino acids 41 to 134 (94 residues), 55.7 bits, see alignment E=2.4e-19 amino acids 157 to 222 (66 residues), 45 bits, see alignment E=5.4e-16 amino acids 280 to 371 (92 residues), 52.3 bits, see alignment E=2.7e-18 amino acids 397 to 466 (70 residues), 43.2 bits, see alignment E=1.9e-15 amino acids 519 to 607 (89 residues), 53 bits, see alignment E=1.7e-18 amino acids 634 to 693 (60 residues), 36.7 bits, see alignment 2.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0599)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88Q96 at UniProt or InterPro

Protein Sequence (766 amino acids)

>PP_0599 paraquat-inducible protein B (Pseudomonas putida KT2440)
MSDLPTAKTRPASNWSAIWILPLIALMIGGWLAWQAYRDAGVEIEVRFESGEGIVANKTE
VIYKGMPVGKVKSLVLDAKGDTQGVIATIEMNKAAEPHLTKGTRFWLVKPSVSLAGISGL
ETLVSGNYIAVSPGEGERTKRFVALKVAPPLSDSEPGLHLTLKADRLGSLNRDSPVFYKQ
IQVGRVKSYRLSEDQSTVEVKVFIEPAYASLVRKHTRFWNASGVSIDASLSGVKVRSESL
SSIVAGGIAFATPEYRKDSPPTDPSLPFRLYEDFDAAQAGIRVKVKLSDYEGLQAGRTPV
MYKGIQVGSLKALKMEDNLASASAELTLDPLTEDYLVDGTQFWVVKPSISLAGITGLEAL
VKGNYIAIRPGEKGARPEREFEARAKAPPLDLKAPGLHMVLFADTLGSLEIGSPVTYRQV
KVGSVQSYQFARNSNRILIGVHIEKEYEKLVNGSSRFWNVSGITLTGGLSGIKIKSESLQ
TLMAGGIAFDTPRPDVPLKRHIPRFRLHDSQEAVNRAGTLITIRVDRADGLKPGTAIRFR
GLDVGSIESVDLTDDLQAVLLRARITESADRIARAGTQFWVVKPALGLVRTENLDTLIGG
QYLEVQPAAKNRGPQRDFIALAEAPEVAGPEVGLPLTLSAPRRGSIKPGVPVTYREVTVG
KVTGFELGQSADRVLIHILIEPRYAALVRSGSRFWNSSGFGFDWGLFKGATVRTESVETL
IDGGIAFATPDGEQMGNPARPQQTFALFEKAEDEWLQWAPKIQIAK