Protein Info for PP_0141 in Pseudomonas putida KT2440

Annotation: putative ABC transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 PF00005: ABC_tran" amino acids 24 to 173 (150 residues), 113.8 bits, see alignment E=1e-36

Best Hits

Swiss-Prot: 37% identical to MLAF_HAEIN: Intermembrane phospholipid transport system ATP-binding protein MlaF (mlaF) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 100% identity to ppf:Pput_0159)

Predicted SEED Role

"ABC transporter ATP-binding protein USSDB6B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RI8 at UniProt or InterPro

Protein Sequence (263 amino acids)

>PP_0141 putative ABC transporter, ATP-binding protein (Pseudomonas putida KT2440)
MSGQNCVIEARGICNRFGRQVVHENLDLDLYRGEILAVVGGSGSGKSVLLRSIIGLRRPN
EGQIKVLGQDLTGLREEQRSLVERRFGVLFQKGALFSSLTVTENVALPLIEHAGLSRSDA
EHLAGVKLALAGLPISAADKYPASLSGGMIKRAALARALALDPDILFLDEPTAGLDPIGA
AAFDQLILTLRDALGLSVFLITHDLDTLYTITDRIAVLSQKKVLVAGPLAEVEKTNDTWI
QEYFHGPRGRAAEQAATRAGQER