Protein Info for PP_0054 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 20 to 49 (30 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 169 to 194 (26 residues), see Phobius details amino acids 205 to 229 (25 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details PF01925: TauE" amino acids 23 to 276 (254 residues), 138.4 bits, see alignment E=1.6e-44

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to ppu:PP_0054)

Predicted SEED Role

"FIG00955467: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RS5 at UniProt or InterPro

Protein Sequence (285 amino acids)

>PP_0054 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MVGTPAAGSRGWAVIEHQLLGAGLGAIIGAVLALTGAGGGILAVPLLVFGLGLSMVEAAP
VGLLAVGLASAVGAVLGLRQGLVRYRAALFIALVGVAAAPFGLMLAHRLPNAPLQVVFAG
VLVYACLRIWRKAAKELCGEANGAHRFIEPCVLNPLQGRLRWTLPCARALAFTGALSGLL
SGLLGVGGGFVIIPALNRYTNLRMASIVSTSLAVIALVSTGSVVSASLAGVMHWQVGAPF
AVGAVLGLLLARPLAARLAGPRLQQMFAVAGWAAALLLAGKALLG