Protein Info for PP_0034 in Pseudomonas putida KT2440

Annotation: putative bactoprenol glycosyl-transferase from phage origin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 240 to 262 (23 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 15 to 154 (140 residues), 37.1 bits, see alignment E=3.2e-13 PF00535: Glycos_transf_2" amino acids 16 to 170 (155 residues), 99.4 bits, see alignment E=2.2e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppf:Pput_0048)

Predicted SEED Role

"Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) (EC 2.4.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.-.-

Use Curated BLAST to search for 2.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RU5 at UniProt or InterPro

Protein Sequence (327 amino acids)

>PP_0034 putative bactoprenol glycosyl-transferase from phage origin (Pseudomonas putida KT2440)
MQTLHRFPERPDPLLTIVVPCFQEEETIPEFHQRITRVVKRLPVSCEILYVDDGSNDRTA
DILRHYQDGSSVRCLSLSRNFGKEAALSAGIDHARGSALIFIDVDLQDPPELIAAMVDYW
QRGYDVVNMQRNLRIGDSWFKRMSARAYYWVMQRLVEKVDMPADVSDFRLIGPAPLAALR
ALDERSRILKGMIGWVGFRTIELPYNRTVRHAGSTKWNAAGLFNLAIESIVSFSRKPLRI
FSLISFGLFVSSICYMLASLVAGSFDIHHLIVGMASFMCVGVAMVGEYLGVTLAEVKRRP
LYFLKHSNKADPVSLHPSMASIEGKKC