Protein Info for PP_0014 in Pseudomonas putida KT2440

Annotation: putative transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: K07497, putative transposase (inferred from 100% identity to ppu:PP_0014)

Predicted SEED Role

"TniA putative transposase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RW5 at UniProt or InterPro

Protein Sequence (652 amino acids)

>PP_0014 putative transposase (Pseudomonas putida KT2440)
MQTFSLRVKLVVIVRGVLMVLEKRLIDRKLLFFDELGEPTKLSEKEFYEAYEKREIEISA
DQPYLGKVPYVRNVPPDISCFPKKHGDEALRRRKYLDDLTKRGKYKLPGDEDMIKKLRDI
AKKIGDACAPSVSTIRRWAAKYIGQNVVKLIPQHAKKGRAAAIQGELEVILEGVINKTYL
QDTIPAVSVVVSEFEDQIKERNKSRLPSDQLKIPSGMTVRRYIAKLDPYLVDKERLGKHA
ADKKHRVAAGVLRVHEILERWEIDHTLLDVQLVDETSGLCIGRPYLTIVLDRFSRMVMGY
LLHLSAPNTETVLRVIERSIRPKAELLKRFPKVRNEWWARGLPARIVPDNAAEFHAGDLI
MGFNELGIEIMYPASRAPQRKGAVERFFSTQNLGLIHNLPGTTFSNIQQRGDYDSEKNAC
FTLPQLEAVVVKWIVDGYHQTPHRGLDNRTPAQVWGTSEANHVISLPVDLDSLECILAKR
ASVKVHHYGIEVAKVGYHSTELAELRMRLADGEKVNVRYRDEAGHVWVHDRFRNLFFKVP
AKDERMAGKSREVWKAAEKALREKYNEQPSFEATHRCYQEIMEDADEARRSQTLRKRRAA
AIAKIDKEGRVTESTPPPKVLAEVEWTGDSIPNIPPAAFKVSVRRPAGSSKP