Protein Info for PFR28_05071 in Pseudomonas sp. RS175

Annotation: D-inositol-3-phosphate glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF13439: Glyco_transf_4" amino acids 28 to 173 (146 residues), 35 bits, see alignment E=2.2e-12 PF00534: Glycos_transf_1" amino acids 182 to 340 (159 residues), 108.9 bits, see alignment E=3.1e-35 PF13692: Glyco_trans_1_4" amino acids 197 to 332 (136 residues), 102 bits, see alignment E=5.3e-33

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a493)

Predicted SEED Role

"Glycosyl transferase in large core OS assembly cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>PFR28_05071 D-inositol-3-phosphate glycosyltransferase (Pseudomonas sp. RS175)
MTRSAERHVLQFCHGYDGPFLDCARQYASLFAGTGYRVTTVFLTGAADAEVAAGCASDEV
LFMEYSSSAVRGLKLGAIADLRRIAASRNFSFCIAHRFKPIYIALLGTRLPVIGVHHAFG
DYQRRTRRLFAHVYRKRLSLLGVSDAVRDDMRRCLPKWPASRIQTLYNRIDLDATQASLL
SRDEARQTLGLDSNAWIIGNVGRLHPDKDQATLLRGFAAALAHLPGNSQLAILGKGRLEK
DLRELSLELGIADRVLFLGQVPEARRYFRAFDVFALSSDHEPFGMVLLEAMAAGVPLLAT
ACGGAKEVVEGVGILFPLGDAEHMAQGLQHLAAMDDLQRRQCAELMLDRLRERFSDRAVR
EAFWRLPQVTELAPGA