Protein Info for PFR28_05049 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 562 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details PF02203: TarH" amino acids 24 to 195 (172 residues), 38.3 bits, see alignment E=2.7e-13 PF12729: 4HB_MCP_1" amino acids 26 to 206 (181 residues), 89.9 bits, see alignment E=3e-29 PF00672: HAMP" amino acids 230 to 282 (53 residues), 43.8 bits, see alignment 5.3e-15 PF00015: MCPsignal" amino acids 344 to 527 (184 residues), 148.8 bits, see alignment E=2.9e-47

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 94% identity to pba:PSEBR_a469)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (562 amino acids)

>PFR28_05049 hypothetical protein (Pseudomonas sp. RS175)
MSDKAINTSHSPHGRAFSVHSMSLRNMNIAPRAFLGFALIGALMLALGVFALTQMSKIRA
SSENIAQNSVPSIQALNEFTQLTLRLRVLSYRLLTNREPDIQQKTFELFEQRNQQIRDAQ
SAYEKLISATEERAAYDQYVQLLGQYRQLEERMKTLSRNNQVDELRALLNTELQNNSEAI
NAVLGRLLEINNQQADDFNQGAAQQYSTAFNWVVTLLVVATGLTLLFAWLLTNSITRPIA
NALDAAEEIAKGNLTRPIVVDGSDEAGRLLRAMSTMQEKLRDTLQRISGSATQLASAAEE
LNSVTDESARGLTQQNDEIEQAATAVNEMTSAVEEVARNAVSTSEASKNATTSAGDGRDL
VQETVGAIERMSADVQSTATLIGNLADESRDIGKVLDVIRGLADQTNLLALNAAIEAARA
GEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQNGTEQAVDSMRNSTERAESTLNIA
RGAGMSLDTINAAILEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGANQTS
AASAELSRLAVDLNSMVGRFSL