Protein Info for PFR28_04953 in Pseudomonas sp. RS175
Annotation: Maltodextrin phosphorylase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 48% identical to PHSG_SYNY3: Glycogen phosphorylase (glgP) from Synechocystis sp. (strain PCC 6803 / Kazusa)
KEGG orthology group: K00688, starch phosphorylase [EC: 2.4.1.1] (inferred from 98% identity to pba:PSEBR_a366)Predicted SEED Role
"Glycogen phosphorylase (EC 2.4.1.1)" in subsystem Glycogen metabolism or Maltose and Maltodextrin Utilization (EC 2.4.1.1)
MetaCyc Pathways
- glycogen degradation I (7/8 steps found)
- glycogen degradation II (5/6 steps found)
- sucrose biosynthesis II (6/8 steps found)
- starch degradation V (3/4 steps found)
- starch degradation III (2/4 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.4.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (816 amino acids)
>PFR28_04953 Maltodextrin phosphorylase (Pseudomonas sp. RS175) MTQEPLVREAEVAAFRDAVLTKLTYAVGKDPDHAFDHDWFEAIALAARDHMVDHWMDHTR QIYRKGQKRVYYLSLEFLIGRLLYDSLSNLGLLDTAREALTELGVDLERIRLLEPDAALG NGGLGRLAACFMESMSTLGIAGHGYGIRYEHGLFRQAVVDGWQQEQTEHWLDFGNPWEFE RPEVVYTIGFGGSVETVTDDTGKTRQVWSPGETVRAIAYDTPVVGWRGASVNTLRLWRAR AMEELHLERFNAGDHLGAVAEVARAESISRVLYPADSTEAGQELRLRQEYFFVAASLQDL LRRHRNMHTSVLTLGDHAAIQLNDTHPSIAVAELMRQLVDVYDVAWDAAWQITQDTLSYT NHTLLPEALETWPVGLMERMLPRHMQIIYLINAQHIDSLRAKGIHDFDVLRSVSLIEEDN GRRVRMGNLAFLGSHSVNGVSGLHTQLMRSTVFSELHKLYPERINNKTNGITFRRWLFQA NAELTSMMVDALGPSVLDNPEERLIELEPFADKQAFRKQFAEQRLHSKKALAYLIHERLG IAVNPSAMFDVQVKRIHEYKRQLLNLLHTVALYQAIRAEPEVDWVPRVKIFAGKAAASYH QAKLIIKLTNDIARVVNNDPTVRGLLKVVFLPNYNVSLAESIIPAADLSEQISTAGFEAS GTSNMKFGLNGALTIGTMDGANVEMHERVGGEHMFIFGLTAEQVEARKRNGEFSAAPDIA ASHRLNDVLQAIRGGVFSPDDPMRYAGLVDSLVDYDRFLVCADFDAYWNAQAKVEERWHD SKQWWRSAVLNTARMGWFSSDRTIREYATDIWKALE