Protein Info for PFR28_04823 in Pseudomonas sp. RS175

Annotation: Cobalt-zinc-cadmium resistance protein CzcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 391 to 414 (24 residues), see Phobius details amino acids 429 to 454 (26 residues), see Phobius details amino acids 464 to 492 (29 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 855 to 874 (20 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 906 to 928 (23 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1006 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1004 (997 residues), 559.8 bits, see alignment E=5.7e-172

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU0234)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1026 amino acids)

>PFR28_04823 Cobalt-zinc-cadmium resistance protein CzcA (Pseudomonas sp. RS175)
MKGPFNLSEWALRHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMIIQTRWPGATQ
EETLRQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLLDTTSAKDIPEIWYQVRKKIN
DIRGDFPQGLQGPGFNDEFGDVYGSVYAFTGDGLSMRQLRDYVEQVRAEVRDVPGLGKVE
MIGEQDEVLYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIDAGPERISVRTSGQFQ
SEKDLANVNLRLNDRFYRLADIADISRGYVDPATPMFRFNGTPAIGLAIAMKKGGNIQDF
GKALHARMNELTADLPVGVEVHTVSDQAEVVEEAVGGFTSALFEAVVIVLVVSFISLGIR
AGLVVACSIPLVLAMVFLFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEKG
ETKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWIV
AVLFAPVIGVHILSTNVKPHSAEPGRIGRAFNGGLLWAMRNRWWAIGITVLLFVLAVFCM
RFVQNQFFPSSDRPEILVDLNLPQNASMEETRKAVDRLEATLKGDPDIVRWSTYIGEGAI
RFYLPLDQQLQNPYYAQLVIVSKGLESRTALTERLHKRLREDFVGIGSYVQSLEMGPPVG
RPIQYRVSGKDIDQVRKHAIELATELDKNSHIGEIIYDWNEPGKVLRIDIAQDKARQLGL
SSEDVARLMNSIVSGSPVTQVNDDIYLINVVGRAEDAERGSPETLQNLQIVTPSGTSIPL
LAFATVRYELEQPLVWRRDRKPTITIKAAVRDEIQPTDLVKQLQPDIDRFAAGLPVGYKV
ATGGTVEESSKAQGPIASVVPLMLFLMATFLMIQLHSVQKLFLVASVAPLGLIGVVLALV
PTGTPMGFVAILGILALIGIIIRNSVILVTQIDEYERAGYTPWDAVVEATEHRRRPILLT
AAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPKRDGDRGR
SLGEGS