Protein Info for PFR28_04548 in Pseudomonas sp. RS175

Annotation: Ubiquinone biosynthesis O-methyltransferase, mitochondrial

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 PF01209: Ubie_methyltran" amino acids 55 to 167 (113 residues), 24.1 bits, see alignment E=6.2e-09 PF13489: Methyltransf_23" amino acids 56 to 202 (147 residues), 59.3 bits, see alignment E=1.2e-19 PF13847: Methyltransf_31" amino acids 56 to 170 (115 residues), 36.2 bits, see alignment E=1.6e-12 PF08241: Methyltransf_11" amino acids 59 to 153 (95 residues), 63.9 bits, see alignment E=5.5e-21 PF08242: Methyltransf_12" amino acids 59 to 152 (94 residues), 44 bits, see alignment E=9.2e-15 PF13649: Methyltransf_25" amino acids 59 to 150 (92 residues), 51.2 bits, see alignment E=5.1e-17

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a5623)

Predicted SEED Role

"SAM-dependent methyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>PFR28_04548 Ubiquinone biosynthesis O-methyltransferase, mitochondrial (Pseudomonas sp. RS175)
MLSLLKKLTTGTPAPATPAADKVDPYMLGLHDAMLSGWFNQRTGELFTGFPVTPQDTLLD
VGCGDGGNVHFCGMRGAKIIIADIDAAKIEATRQRLGDTPARDIECHVTDCNPLPIADGT
ATRVVSTEVIEHVDDPAQFLAELVRVGRPGALYLLSVPHPSSEELQKDIAAPEYFQKPNH
IRIIGEEQFKAMVSEAGLEVLSHSQYGFYWSMWMLLFWEAKVDFSNADHPLLNHWADTWQ
AVLNSPRGAQIKQALDGVVAKSQVIIARKP