Protein Info for PFR28_04488 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 transmembrane" amino acids 41 to 66 (26 residues), see Phobius details amino acids 465 to 487 (23 residues), see Phobius details amino acids 500 to 523 (24 residues), see Phobius details amino acids 529 to 549 (21 residues), see Phobius details amino acids 566 to 586 (21 residues), see Phobius details amino acids 612 to 631 (20 residues), see Phobius details amino acids 660 to 681 (22 residues), see Phobius details amino acids 726 to 747 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 509 to 756 (248 residues), 28.1 bits, see alignment E=7.9e-11

Best Hits

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 97% identity to pba:PSEBR_a119)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>PFR28_04488 hypothetical protein (Pseudomonas sp. RS175)
MNDLANSTMTTTSPPKRIDFNTPELQRKRRVRALKDRLTRWYVLVGGLAVLAAITLIFFF
LAYVVLPLFQGADLTAKDSITPAWMQDAGKPLMISIEEQNQVAMRVSDKGQALFFDLTSG
AELRRVDLPVPAGASVTSIGEDQPGSPLVVIGLSNGQALVFRHTYKVTYPDGKKTISPAV
EYPYGETPIVLSEQGAPLEHVSLNATDSTLLLAGSSGAQLQVLSLTSEENMMTGEITSEQ
TRIELPQMTEPVKNIFVDPRQQWLYVVNGRAQADVFNLRDKSLNGRYKLLENAEAQITAA
AQLVGGISLIFGDSKGGLAQWFMARDADGEQRLKQIRTFQMGTTPIVEISAEERRKGFVA
LDAAGKLGVFHSTAHRTLLVDQVVDGQGLFGMSPRANRLIVEQGGKLQPLTLDNPHPEVS
WSALWSKVWYENYDEPKYVWQSTAANTDFEPKLSLSPLTFGTLKAAFYAMLLAAPLAVAA
AIYTAYFMAPGMRRKVKPVIELMEAMPTVILGFFAGLFLAPYVEGHLPGIFSLLMLLPIG
ILVSGFAFSRLPESIRLKVPDGWESALLIPVIMFVGWLSLYMSPYMEAWFFGGDMRMWIS
HDLGITYDQRNALVVGLAMGFAVIPNIYSIAEDAVFSVPRGLTLGSLALGATPWQTMTRV
VILTASPGIFSALMIGMGRAVGETMIVLMATGNTPVMEMNLFEGLRTLAANVAVEMPESE
VGGSHYRVLFLSALVLLLFTFVMNTLAELIRQRLRKKYSSL