Protein Info for PFR28_04447 in Pseudomonas sp. RS175

Annotation: Serine/threonine-protein kinase PknD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 transmembrane" amino acids 338 to 360 (23 residues), see Phobius details PF00069: Pkinase" amino acids 12 to 253 (242 residues), 161.7 bits, see alignment E=3.5e-51 PF07714: PK_Tyr_Ser-Thr" amino acids 15 to 252 (238 residues), 114.2 bits, see alignment E=9.8e-37

Best Hits

KEGG orthology group: K11912, serine/threonine-protein kinase PpkA [EC: 2.7.11.1] (inferred from 91% identity to pba:PSEBR_a5549)

Predicted SEED Role

"Serine/threonine protein kinase (EC 2.7.11.1) PpkA" (EC 2.7.11.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.1

Use Curated BLAST to search for 2.7.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1034 amino acids)

>PFR28_04447 Serine/threonine-protein kinase PknD (Pseudomonas sp. RS175)
MSSVLNIQIPGYDIEGEIGEGAMASVYLATQRSLERKVALKVMAAALAADPTFCERFLRE
GKTLARLSHPHTVTIHDIGNVGELYYMAMEYLPNGTLKERIAAGLSPEQGLAYIRQIASA
LGYAHGLGLVHRDVKPANILFRADGTAVLSDFGIAKSLDDRTQFTQAGFAVGTPSYMSPE
QARGQDIDGRADLYALGVVLYEILVGKLPYTGNDALSTALAHLTEPLPELPVHHGRYQDV
LRKLLAKDPAERFPDAAALLRALDNLPPESDATLIRPLPLPVSTKPVGDDLAGLTPMSID
IPSGPVPPSSQAQPQARPVPPPVSPSRPAVSPPRKTPVFALAAVAVAVALALGGAGYWWL
SGDSGQASKPPLASGSSATKPPAKTPDVPPAKAPDASPAQPPVTPPVNPPVANQADGGQR
PLLMAGKKTLFQRVLSKPGATLVDEPGAAPGKALPAFSVLYVYQRKDVDGSPWVRVGAAT
DGRSDGWLPAAQVSDWKQSLVLKFTERSGRAPVMFLRQPGEVEKLLANPTNARNVLLKAQ
QNREDNQQVLALEPAASAVPQNQFYLLPIFDSRESFDENGQPVQLLNVASIDPGNTPRAS
TNTPITTANADAFRTAVVLVVDTTVSMQPYIDQVRDVVHQLQTRIAERGELDSVSFGMVG
FRSSVKKTPGLEYVAKTLITLEQGRDPQRFMDLARQVKASMVSSHSFNEDAFAGVMEAVE
GMDWSGYGGRLILLVTDAGALRKNDPFAATQMNEAEVRQAALGKQIKIYALHLLSDAGKK
THAGAQSQYRILTADANPQIGDLYIPVPGADVRKFGERVDEIGSVFADLVHQVRSNKPQS
VPMLSAAPSLADKSAAVGYAMHMDFLGRKAASQAPQLVSAWTADRDLTNPALPAFQVCVM
LTKLQLNDLQQSLKLIVDAARKTQRSPKDFFQEIASASAYMSRDPSALRKGGNLADGGIL
GEYLEGLPYRSKSLNMTQDLWLSLSVAEQEDFIDELDSKIRLYETFHNDLANWVRFGDAE
PGDALYRVPLSTLP