Protein Info for PFR28_04391 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 120 to 274 (155 residues), 81.1 bits, see alignment E=3.7e-27 PF00990: GGDEF" amino acids 125 to 274 (150 residues), 109.2 bits, see alignment E=1.9e-35 PF00563: EAL" amino acids 298 to 533 (236 residues), 261.8 bits, see alignment E=5.3e-82

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a5500)

Predicted SEED Role

"GGDEF domain/EAL domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>PFR28_04391 hypothetical protein (Pseudomonas sp. RS175)
MSTPVEPLRLLLLAEEPEWPAILRECLAPMAGSIVLTSAPDWESVSDLFEDNRSAVLLTV
AALQPAPGRCRLPTVLLLEQEPATPPDGASDWLVRDTLDSATLRRCLRHVRERGVLENTL
QRLAEQDPLTGIANRQGFQTLLAARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLI
LQVVSRLKGSLEAGDQLARLGSDEFALLIDTRRAPQRAEWIAERITQAMAEPYWVDGESL
LIGCSLGIAHARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL
RRALRRDELELHYQPRLDLDSGNIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLG
YWVISRALRDMQALRERGLAPLHMAVNLSFRQFQDSQLLSTLSRLIAERGVEAQWLEFEL
TETAVMRRSELVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGME
QREENRKLVHAMINLAHNLNLEVVAEGVETPEQLDLLRGFGCDQVQGYLISKPLPLPELV
EYLTFEGDQQSTHDVVV