Protein Info for PFR28_04380 in Pseudomonas sp. RS175

Annotation: Transcriptional regulator SutA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF20661: DUF6813" amino acids 60 to 93 (34 residues), 46.6 bits, see alignment E=8.3e-17

Best Hits

Swiss-Prot: 69% identical to SUTA_PSEAB: Transcriptional regulator SutA (sutA) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_5503)

Predicted SEED Role

"FIG00953808: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (106 amino acids)

>PFR28_04380 Transcriptional regulator SutA (Pseudomonas sp. RS175)
MSDDDLENDDLEVGDEDEAEDGLEAAAEDVADDDVADVPAPAKGKAKAAVSIDELPSVEA
KNKERDALAKAMEEFLARGGKVQEVEANVVADPPKKPDNKYGSRPI